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Projects

NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

121-140 / 663 show all
BioMedLAT Annotation of 643 questions from BioASQ with the Lexical Answer Type (LAT) and headword.02016-09-23Developing
新着論文レビュー 新着論文レビューに関するアノテーション。0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
TextMining-in-bioinformatics TextMining in bioinformatics0Aohnewug2020-04-21Developing
SMAFIRA_Feedback_Labels 0zebet2021-01-21Developing
pubmed-enju-pas Annotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 MEnjuJin-Dong Kim2023-11-24Developing
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
LitCovid-PMC-OGER-BB Annotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)3.14 MFabio RinaldiNico Colic2023-11-24Developing
PMID_GLOBAL Global sentencer tagging of public PMID abstracts. Open and publicly available to the global community.2.24 Malo332023-11-24Developing
LitCovid-PD-CHEBI 1.43 MJin-Dong Kim2023-11-24Developing
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2023-11-24Developing
Biotea NCBO annotation on full text for PMC articles. Currently including only a small set of 2811 articles corresponding to those supporting curated diesease-protein annotation from UniProt and with machine-processable full text.894 KL. Garcia2023-11-24Developing
GlyCosmosP-Glycan-Motif 8Jin-Dong Kim2023-11-24Developing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
bionlp-ost-19-BB-rel-ner-test 125ldeleger2023-11-24Developing
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
PubMed-German-test A collection of PubMed abstracts which are written in German0Jin-Dong Kim2023-11-24Developing
PT_NER_NEL_Diana 318dpavot2023-11-24Developing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2023-11-24Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

121-140 / 663 show all
BioMedLAT 02016-09-23Developing
新着論文レビュー 0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
TextMining-in-bioinformatics 0Aohnewug2020-04-21Developing
SMAFIRA_Feedback_Labels 0zebet2021-01-21Developing
pubmed-enju-pas 19.1 MEnjuJin-Dong Kim2023-11-24Developing
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
LitCovid-PMC-OGER-BB 3.14 MFabio RinaldiNico Colic2023-11-24Developing
PMID_GLOBAL 2.24 Malo332023-11-24Developing
LitCovid-PD-CHEBI 1.43 MJin-Dong Kim2023-11-24Developing
Epistemic_Statements 1.42 Mmboguslav2023-11-24Developing
Biotea 894 KL. Garcia2023-11-24Developing
GlyCosmosP-Glycan-Motif 8Jin-Dong Kim2023-11-24Developing
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
bionlp-ost-19-BB-rel-ner-test 125ldeleger2023-11-24Developing
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
PubMed-German-test 0Jin-Dong Kim2023-11-24Developing
PT_NER_NEL_Diana 318dpavot2023-11-24Developing
PubMed-2017 0Jin-Dong Kim2023-11-24Developing