| LitCovid-sample-PD-IDO | | | 1.27 K | | Jin-Dong Kim | 2021-01-14 | Beta | |
| LitCovid-sample-PD-UBERON | | PubDictionaries annotation for UBERON terms - updated at 2020-04-30
It is annotation for anatomical entities based on Uberon.
The terms in Uberon are uploaded in PubDictionaries
(Uberon),
with which the annotations in this project are produced.
The parameter configuration used for this project is
here.
Note that it is an automatically generated dictionary-based annotation.
It will be updated periodically, as the documents are increased, and the dictionary is improved.
| 310 | | Jin-Dong Kim | 2021-01-14 | Beta | |
| LitCovid-sample-PD-NCBITaxon | | | 1.35 K | | Jin-Dong Kim | 2021-01-14 | Beta | |
| LitCovid-sample-PD-GO-BP-0 | | | 708 | | Jin-Dong Kim | 2021-01-16 | Beta | |
| consensus_PMA_Age_Indications | | | 1.7 K | | laurenc | 2021-02-07 | Beta | |
| NEUROSES | | This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger. | 2.14 M | | nestoralvaro | 2021-03-10 | Beta | |
| Ab3P-abbreviations | | This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs.
Abbreviation definition identification based on automatic precision estimates
Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur
BMC Bioinformatics20089:402
DOI: 10.1186/1471-2105-9-402 | 2.33 K | Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur | comeau | 2021-03-10 | Beta | |
| QFMC_MEDLINE | | Quaero French Medical Corpus:
Annotation of MEDLINE titles | 5.9 K | Aurélie Névéol | Pierre Zweigenbaum | 2021-03-10 | Beta | |
| LitCovid_Glycan-Motif-Structure | | PubDictionaries annotation for glycan-Motif terms. | 6.51 K | | ISSAKU YAMADA | 2021-03-10 | Beta | |
| PubCasesORDO | | ORDO annotation in PubCases | 865 K | | Toyofumi Fujiwara | 2021-03-11 | Beta | |
| DisGeNET | | Disease-Gene association annotation. | 3.12 M | Nuria Queralt | Jin-Dong Kim | 2021-03-11 | Beta | |
| PubmedHPO | | Human phenotype annotation to PubMed abstracts, based on the HPO ontology | 12.4 M | Tudor Groza | tudor | 2021-03-11 | Beta | |
| PubCasesHPO | | HPO annotation in PubCases | 3.18 M | | Toyofumi Fujiwara | 2021-03-11 | Beta | |
| LitCovid-PubTator | | | 5.88 M | | Jin-Dong Kim | 2021-06-06 | Beta | |
| LitCovid-PD-HP | | | 922 K | | Jin-Dong Kim | 2021-06-19 | Beta | |
| sonoma2 | | sonoma2 | 9.09 K | Standigm | chanung | 2021-10-03 | Beta | |
| TEST-ChemicalEntity | | ChemicalEntity : Annotated by PD-MeSH2022_CHEBI_tuned-B | 827 | | yucca | 2021-12-23 | Beta | |
| GoldHamster | | | 285 K | | zebet | 2022-10-06 | Beta | |
| IMDB-NLP | | Annotations for chunking and semantic role labeling based on in-memory databases. | 0 | | | 2016-05-06 | Uploading | |
| CoGe_Citation_Annotations | | Annotated PMC abstracts+full articles, that cite the "CoGe" papers (PMID: 18952863, 18269575).
Total Num Citations: 165
Total Num Unique Citations: 141
Total Num Abstracts: 165
Total Num Whole Articles: 165 | 0 | Heather Lent | hclent | 2016-10-11 | Uploading | |
