| SCAI-Test | | A small corpus for the evaluation of dictionaries containing chemical entities.
Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf
Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html | 1.21 K | CALBC Project | Yue Wang | 2023-11-28 | Released | |
| bionlp-st-epi-2011-training | | The training dataset from the Epigenetics and Post-translational Modifications (EPI) task in the BioNLP Shared Task 2011.
The core entities of the task are genes and gene products (RNA and proteins), identified in the data simply as "Protein" annotations. | 7.59 K | GENIA | Yue Wang | 2023-11-29 | Released | |
| SMAFIRA_Feedback_Labels | | | 0 | | zebet | 2021-01-21 | Developing | |
| UseCases_ArguminSci_Discourse | | Predictions from ArguminSci(http://lelystad.informatik.uni-mannheim.de/) for the seven datasets and for discourse categories | 7.12 K | | zebet | 2023-11-29 | Developing | |
| SMAFIRA_Feedback_Research_Goal | | | 15 | | zebet | 2023-11-28 | Released | |
| SMAFIRA_OGER_TEXT | | | 116 | | zebet | 2023-11-28 | Developing | |
| Goldhamster2_CellLineAnn | | | 618 | | zebet | 2023-11-29 | Developing | |
| GoldHamster | | | 285 K | | zebet | 2023-11-29 | Beta | |
| LitCovid-ArguminSci | | Discourse elements for the documents in the LitCovid dataset.
Annotations were automatically predicted by the ArguminSci tool (https://github.com/anlausch/ArguminSci) | 4.9 K | | zebet | 2023-11-27 | Released | |
| Goldhamster2_Cellosaurus | | | 27.5 K | | zebet | 2023-11-29 | Developing | |
| EC-Neurodegenerative | | Alternative methods to animal experiments for neurodegenerative diseases. | 0 | | zebet | 2023-11-30 | Developing | |
| SMAFIRA-Case-Studies-21494637 | | From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 0 | | zebet | 2023-11-26 | Developing | |
| SMAFIRA-Case-Studies-24204323 | | From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 0 | | zebet | 2023-11-29 | Developing | |
| SMAFIRA-Case-Studies-19735549 | | From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 0 | | zebet | 2023-11-30 | Developing | |
| LitCovid-PubTatorCentral | | Named-entities for the documents in the LitCovid dataset. Annotations were automatically predicted by the PubTatorCentral tool (https://www.ncbi.nlm.nih.gov/research/pubtator/) | 4.64 K | | zebet | 2023-11-27 | Released | |
| SMAFIRA-Case-Studies-16850029 | | From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 0 | | zebet | 2023-11-30 | Developing | |
| PubMed_ArguminSci | | Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci). | 777 K | | zebet | 2023-11-24 | Released | |
| UseCases_PubTatorCentral | | Predictions from PubTator Central (https://www.ncbi.nlm.nih.gov/research/pubtator/) for the seven datasets and for four entity types (disease,chemical,species,cellline) | 0 | | zebet | 2023-11-29 | Developing | |
| c_corpus | | Documents included in the c_corpus: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 107 K | | | 2023-11-29 | Released | |
| PubMed_Structured_Abstracts | | Sections (zones) as retrieved from PubMed. | 131 K | | zebet | 2023-11-28 | Released | |
