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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

521-540 / 593 show all
proj_h_1 6.7 K2023-11-24
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
LitCoin-GeneOrGeneProduct-v3 GeneOrGeneProduct after false positive control4.67 KJin-Dong Kim2023-11-24
CoMAGC In order to access the large amount of information in biomedical literature about genes implicated in various cancers both efficiently and accurately, the aid of text mining (TM) systems is invaluable. Current TM systems do target either gene-cancer relations or biological processes involving genes and cancers, but the former type produces information not comprehensive enough to explain how a gene affects a cancer, and the latter does not provide a concise summary of gene-cancer relations. In order to support the development of TM systems that are specifically targeting gene-cancer relations but are still able to capture complex information in biomedical sentences, we publish CoMAGC, a corpus with multi- faceted annotations of gene-cancer relations. In CoMAGC, a piece of annotation is composed of four semantically orthogonal concepts that together express 1) how a gene changes, 2) how a cancer changes and 3) the causality between the gene and the cancer. The multi-faceted annotations are shown to have high inter-annotator agreement. In addition, the annotations in CoMAGC allow us to infer the prospective roles of genes in cancers and to classify the genes into three classes according to the inferred roles. We encode the mapping between multi-faceted annotations and gene classes into 10 inference rules. The inference rules produce results with high accuracy as measured against human annotations. CoMAGC consists of 821 sentences on prostate, breast and ovarian cancers. Currently, the corpus deals with changes in gene expression levels among other types of gene changes.1.53 KLee et alHee-Jin Lee2023-11-24Released
tmVarCorpus Wei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156.1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
Trait curation Project for trait curation in PGDBj479Sachiko ShirasawaSachiko Shirasawa2023-11-24Testing
genia-medco-coref Coreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
bionlp-ost-19-BB-rel-ner-test 125ldeleger2023-11-24Developing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24
OryzaGP_2022 41.3 Klarmande2023-11-24
sonoma _19.3 KStandigm2023-11-24Testing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
MENA-example2 3Jin-Dong Kim2023-11-24Testing
Test-Documents 1Jin-Dong Kim2023-11-24
GlyCosmosP-Glycan-Motif 8Jin-Dong Kim2023-11-24Developing
test10 212Jin-Dong Kim2023-11-24
PubMed_ArguminSci Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci).777 Kzebet2023-11-24Released
0_colil 781 KYue Wang2023-11-24
biomarkers IL/TNF biomarkers857 Kalo332023-11-24
PubCasesORDO ORDO annotation in PubCases865 KToyofumi Fujiwara2023-11-24Beta
NameT# Ann.AuthorMaintainerUpdated_at Status

521-540 / 593 show all
proj_h_1 6.7 K2023-11-24
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
LitCoin-GeneOrGeneProduct-v3 4.67 KJin-Dong Kim2023-11-24
CoMAGC 1.53 KLee et alHee-Jin Lee2023-11-24Released
tmVarCorpus 1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
Trait curation 479Sachiko ShirasawaSachiko Shirasawa2023-11-24Testing
genia-medco-coref 45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
bionlp-ost-19-BB-rel-ner-test 125ldeleger2023-11-24Developing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24
OryzaGP_2022 41.3 Klarmande2023-11-24
sonoma 19.3 KStandigm2023-11-24Testing
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
MENA-example2 3Jin-Dong Kim2023-11-24Testing
Test-Documents 1Jin-Dong Kim2023-11-24
GlyCosmosP-Glycan-Motif 8Jin-Dong Kim2023-11-24Developing
test10 212Jin-Dong Kim2023-11-24
PubMed_ArguminSci 777 Kzebet2023-11-24Released
0_colil 781 KYue Wang2023-11-24
biomarkers 857 Kalo332023-11-24
PubCasesORDO 865 KToyofumi Fujiwara2023-11-24Beta