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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 556 show all
PubMed_Structured_Abstracts Sections (zones) as retrieved from PubMed.131 Kzebet2023-11-28Released
2015-BEL-Sample-2 The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 KFabio RinaldiNico Colic2023-11-28Released
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
bionlp-st-ge-2016-coref Coreference annotation to the benchmark data set (reference and test) of BioNLP-ST 2016 GE task. For detailed information, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test).853DBCLSJin-Dong Kim2023-11-28Released
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2023-11-28Released
SCAI-Test A small corpus for the evaluation of dictionaries containing chemical entities. Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html1.21 KCALBC ProjectYue Wang2023-11-28Released
CellFinder CellFinder corpus4.75 KMariana Neves, Alexander Damaschun, Andreas Kurtz, Ulf LeserMariana Neves2023-11-27Released
123123123 123123123150yaoxinzhi2023-11-27Released
PIR-corpus1 The Protein Information Resource (PIR) is not biased towards any particular biomedical domain, and is expected to provide more diverse protein names in a given sample size. Annotation category: protein, compound-protein, acronym.4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
LitCovid-sentences-v1 Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 KJin-Dong Kim2023-11-27Released
Zoonoses_partialAnnotation This is a part of Zoonoses project used by PanZoora. But Zoonoses project provides whole manual annotated data but this is partial ones.266AikoHIRAKI2023-11-27Released
bionlp-st-ge-2016-test-proteins Protein annotations to the benchmark test data set of the BioNLP-ST 2016 GE task. A participant of the GE task may import the documents and annotations of this project to his/her own project, to begin with producing event annotations. For more details, please refer to the benchmark test data set (bionlp-st-ge-2016-test). 4.34 KDBCLSJin-Dong Kim2023-11-27Released
bionlp-st-pc-2013-training The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013. The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component.7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
LitCovid-PubTatorCentral Named-entities for the documents in the LitCovid dataset. Annotations were automatically predicted by the PubTatorCentral tool (https://www.ncbi.nlm.nih.gov/research/pubtator/)4.64 Kzebet2023-11-27Released
LitCovid-ArguminSci Discourse elements for the documents in the LitCovid dataset. Annotations were automatically predicted by the ArguminSci tool (https://github.com/anlausch/ArguminSci)4.9 Kzebet2023-11-27Released
LitCovid-PD-FMA-UBERON-v1 PubDictionaries annotation for anatomy terms - updated at 2020-04-20 Disease term annotation based on FMA and Uberon. Version 2020-04-20. The terms in FMA and Uberon are loaded in PubDictionaries (FMA and Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here for FMA and there for Uberon. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.4.3 KJin-Dong Kim2023-11-27Released
CORD-19-PD-MONDO PubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 MJin-Dong Kim2023-11-27Released
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
PennBioIE The PennBioIE corpus (0.9) covers two domains of biomedical knowledge. One is the inhibition of the cytochrome P450 family of enzymes (CYP450 or CYP for short) , and the other domain is the molecular genetics of dance (oncology or onco for short).23.8 KUPenn Biomedical Information Extraction ProjectYue Wang2023-11-26Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 556 show all
PubMed_Structured_Abstracts 131 Kzebet2023-11-28Released
2015-BEL-Sample-2 11.4 KFabio RinaldiNico Colic2023-11-28Released
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
bionlp-st-ge-2016-coref 853DBCLSJin-Dong Kim2023-11-28Released
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2023-11-28Released
SCAI-Test 1.21 KCALBC ProjectYue Wang2023-11-28Released
CellFinder 4.75 KMariana Neves, Alexander Damaschun, Andreas Kurtz, Ulf LeserMariana Neves2023-11-27Released
123123123 150yaoxinzhi2023-11-27Released
PIR-corpus1 4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
LitCovid-sentences-v1 16.5 KJin-Dong Kim2023-11-27Released
Zoonoses_partialAnnotation 266AikoHIRAKI2023-11-27Released
bionlp-st-ge-2016-test-proteins 4.34 KDBCLSJin-Dong Kim2023-11-27Released
bionlp-st-pc-2013-training 7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
LitCovid-PubTatorCentral 4.64 Kzebet2023-11-27Released
LitCovid-ArguminSci 4.9 Kzebet2023-11-27Released
LitCovid-PD-FMA-UBERON-v1 4.3 KJin-Dong Kim2023-11-27Released
CORD-19-PD-MONDO 6.32 MJin-Dong Kim2023-11-27Released
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
PennBioIE 23.8 KUPenn Biomedical Information Extraction ProjectYue Wang2023-11-26Released