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Name TDescription# Ann.AuthorMaintainerUpdated_atStatus

101-120 / 593 show all
test01 0Erika Asamizu2015-09-11Testing
TEST0 3.37 MYue Wang2023-11-24
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
taxonomy 10rdmpage2023-11-27Testing
tagtog-test Test project only for tagtog submissions0tagtogtagtog2023-11-29Testing
tagtog-demo demo documents produced by tagtog annotations262tagtog2023-11-27Developing
tagtog OpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
Systems_Biology 0Sophie Nam2023-11-29
Staphylococcus 7.46 Kharuoharuo2023-11-29Testing
speech-test 6Jin-Dong Kim2023-11-26Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
SPECIES800 SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
sonoma2 sonoma29.09 KStandigmchanung2023-11-29Beta
sonoma _19.3 KStandigm2023-11-24Testing
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
SMAFIRA_OGER_TEXT 116zebet2023-11-28Developing
SMAFIRA_Methods Predictions for methods for the SMAFIRA project.0zebet2023-11-28Developing
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
SMAFIRA_Feedback_Labels 0zebet2021-01-21Developing
Name T# Ann.AuthorMaintainerUpdated_atStatus

101-120 / 593 show all
test01 0Erika Asamizu2015-09-11Testing
TEST0 3.37 MYue Wang2023-11-24
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
taxonomy 10rdmpage2023-11-27Testing
tagtog-test 0tagtogtagtog2023-11-29Testing
tagtog-demo 262tagtog2023-11-27Developing
tagtog 0tagtogtagtog2015-02-23Developing
Systems_Biology 0Sophie Nam2023-11-29
Staphylococcus 7.46 Kharuoharuo2023-11-29Testing
speech-test 6Jin-Dong Kim2023-11-26Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
SPECIES800 3.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
sonoma2 9.09 KStandigmchanung2023-11-29Beta
sonoma 19.3 KStandigm2023-11-24Testing
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
SMAFIRA_OGER_TEXT 116zebet2023-11-28Developing
SMAFIRA_Methods 0zebet2023-11-28Developing
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
SMAFIRA_Feedback_Labels 0zebet2021-01-21Developing