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Name TDescription# Ann.AuthorMaintainerUpdated_atStatus

481-500 / 593 show all
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
SPECIES800 SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
speech-test 6Jin-Dong Kim2023-11-26Testing
Staphylococcus 7.46 Kharuoharuo2023-11-29Testing
Systems_Biology 0Sophie Nam2023-11-29
tagtog OpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
tagtog-demo demo documents produced by tagtog annotations262tagtog2023-11-27Developing
tagtog-test Test project only for tagtog submissions0tagtogtagtog2023-11-29Testing
taxonomy 10rdmpage2023-11-27Testing
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
TEST0 3.37 MYue Wang2023-11-24
test01 0Erika Asamizu2015-09-11Testing
test1 test121H. S. ParkSophie Nam2023-11-26Testing
test10 212Jin-Dong Kim2023-11-24
Test190926 test0Takeru Nakazatonakazato2023-11-29Testing
test-2 0therightstef2023-11-29Testing
test2 12.3 Kykyao2023-11-29
Test20200205 553BLAH6-Tweets2023-11-29Testing
test-210614 17.8 KJin-Dong Kim2024-01-05Testing
Name T# Ann.AuthorMaintainerUpdated_atStatus

481-500 / 593 show all
spacy-test 131 KNico ColicNico Colic2023-11-29Released
SPECIES800 3.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
speech-test 6Jin-Dong Kim2023-11-26Testing
Staphylococcus 7.46 Kharuoharuo2023-11-29Testing
Systems_Biology 0Sophie Nam2023-11-29
tagtog 0tagtogtagtog2015-02-23Developing
tagtog-demo 262tagtog2023-11-27Developing
tagtog-test 0tagtogtagtog2023-11-29Testing
taxonomy 10rdmpage2023-11-27Testing
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
TEST0 3.37 MYue Wang2023-11-24
test01 0Erika Asamizu2015-09-11Testing
test1 21H. S. ParkSophie Nam2023-11-26Testing
test10 212Jin-Dong Kim2023-11-24
Test190926 0Takeru Nakazatonakazato2023-11-29Testing
test-2 0therightstef2023-11-29Testing
test2 12.3 Kykyao2023-11-29
Test20200205 553BLAH6-Tweets2023-11-29Testing
test-210614 17.8 KJin-Dong Kim2024-01-05Testing