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Projects

NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

541-560 / 593 show all
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2023-11-26Testing
EwhaLecture2020 testing02023-11-29Testing
infoMED_PsA testing45Timmtimmo2023-11-30Testing
testing testing0ewha-bio2023-11-29Testing
Testing Testing241Hyun-Seok Parkhsp202023-11-28Testing
silkworm_test test project457yaguchi2023-11-29Testing
traitCurationTest_ichihara testProject1508064ichihara_hisakoHisako Ichihara2023-11-29Testing
tagtog-test Test project only for tagtog submissions0tagtogtagtog2023-11-29Testing
test_for_save_auth Test Project to test authentication at saving.0shigeru nakajima2024-09-20Testing
biosemtest test submitting Peregrine annotations35.6 KMark Thompsonmarkthompson2023-11-29Testing
Text2LOD Test Project Text2LOD Test Project2Shuichi KawashimaShuichi Kawashima2023-11-30Testing
TextMining-in-bioinformatics TextMining in bioinformatics0Aohnewug2020-04-21Developing
2015-BEL-Sample-2 The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 KFabio RinaldiNico Colic2023-11-28Released
AIMed The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
bionlp-st-gro-2013-development The development data set of the BioNLP-ST 2013 GRO task, including 50 MEDLINE abstracts that are annotated with concepts and relations of the Gene Regulation Ontology (GRO; http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html)2.66 KJung-jae KimJung-jae Kim2023-11-29Testing
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2023-11-24Developing
LocText The manually annotated corpus consists of 100 PubMed abstracts annotated for proteins, subcellular localizations, organisms and relations between them. The focus of the corpus is on annotation of proteins and their subcellular localizations.2.29 KGoldberg et alShrikant Vinchurkar2023-11-29Released
NCBIDiseaseCorpus The NCBI disease corpus is fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

541-560 / 593 show all
AlvisNLP-Async-Test 0Robert Bossyrbossy2023-11-26Testing
EwhaLecture2020 02023-11-29Testing
infoMED_PsA 45Timmtimmo2023-11-30Testing
testing 0ewha-bio2023-11-29Testing
Testing 241Hyun-Seok Parkhsp202023-11-28Testing
silkworm_test 457yaguchi2023-11-29Testing
traitCurationTest_ichihara 4ichihara_hisakoHisako Ichihara2023-11-29Testing
tagtog-test 0tagtogtagtog2023-11-29Testing
test_for_save_auth 0shigeru nakajima2024-09-20Testing
biosemtest 35.6 KMark Thompsonmarkthompson2023-11-29Testing
Text2LOD Test Project 2Shuichi KawashimaShuichi Kawashima2023-11-30Testing
TextMining-in-bioinformatics 0Aohnewug2020-04-21Developing
2015-BEL-Sample-2 11.4 KFabio RinaldiNico Colic2023-11-28Released
AIMed 4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
bionlp-st-gro-2013-development 2.66 KJung-jae KimJung-jae Kim2023-11-29Testing
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
Epistemic_Statements 1.42 Mmboguslav2023-11-24Developing
LocText 2.29 KGoldberg et alShrikant Vinchurkar2023-11-29Released
NCBIDiseaseCorpus 6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released