> top > projects

Projects

NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

401-420 / 593 show all
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
genia-medco-coref Coreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
CyanoBase Cyanobacteria are prokaryotic organisms that have served as important model organisms for studying oxygenic photosynthesis and have played a significant role in the Earthfs history as primary producers of atmospheric oxygen. Publication: http://www.aclweb.org/anthology/W12-24301.1 KKazusa DNA Research Institute and Database Center for Life Science (DBCLS)Yue Wang2023-11-26Released
tagtog-demo demo documents produced by tagtog annotations262tagtog2023-11-27Developing
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
blah6 device Annotator374slee72682023-11-28Testing
LitCovid-ArguminSci Discourse elements for the documents in the LitCovid dataset. Annotations were automatically predicted by the ArguminSci tool (https://github.com/anlausch/ArguminSci)4.9 Kzebet2023-11-27Released
LitCoin-MONDO_bioort2019 DiseaeseOrPhenotypicFeature3.72 KEisuke Dohi2023-11-29Testing
PGDBj_disease_curation1 disease curation test348ichihara_hisakoichihara_hisako2023-12-03Testing
Nanbyo-330-20171127 Disease descriptions extracted from MHLW19.8 KToyofumi Fujiwara2023-11-26Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
DLUT931 DLUT NLP Lab.Test our event extration result for 16 GE task.4.57 KDLUT9312023-11-30Testing
PMC-KEGG Documents from PMC including the word KEGG, with names of software tools and databases marked. 27yucca2023-11-28Developing
c_corpus Documents included in the c_corpus: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv107 K2023-11-29Released
RDoCTask1SampleData Each annotation file contains an annotated abstract with an RDoC category. Each title span in these sample data is annotated with the corresponding related RDoC construct, although the RDoC category would apply for the entire abstract. The annotation data are formatted as json files. Please refer to the following page for a more detailed description of the json format http://www.pubannotation.org/docs/annotation-format/.20mmanani1s2023-11-29Released
RDoCTask2SampleData Each annotation file contains an annotated abstract with the most relevant sentence. The relevant sentence is annotated with the RDoC category name. The annotation data are formatted as json files. Please refer to the following page for a more detailed description of the json format http://www.pubannotation.org/docs/annotation-format/. 10mmanani1s2023-11-29Released
Grays_part1 Embryology1.44 Kokubo2023-11-30Testing
NameT# Ann.AuthorMaintainerUpdated_atStatus

401-420 / 593 show all
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
genia-medco-coref 45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
CyanoBase 1.1 KKazusa DNA Research Institute and Database Center for Life Science (DBCLS)Yue Wang2023-11-26Released
tagtog-demo 262tagtog2023-11-27Developing
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
blah6 374slee72682023-11-28Testing
LitCovid-ArguminSci 4.9 Kzebet2023-11-27Released
LitCoin-MONDO_bioort2019 3.72 KEisuke Dohi2023-11-29Testing
PGDBj_disease_curation1 348ichihara_hisakoichihara_hisako2023-12-03Testing
Nanbyo-330-20171127 19.8 KToyofumi Fujiwara2023-11-26Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
DLUT931 4.57 KDLUT9312023-11-30Testing
PMC-KEGG 27yucca2023-11-28Developing
c_corpus 107 K2023-11-29Released
RDoCTask1SampleData 20mmanani1s2023-11-29Released
RDoCTask2SampleData 10mmanani1s2023-11-29Released
Grays_part1 1.44 Kokubo2023-11-30Testing