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NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

641-660 / 663 show all
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
Anatomy-UBERON Anatomical structures based on UBERON.2.12 MJin-Dong Kim2024-09-19Developing
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2023-11-24Beta
PMID_GLOBAL Global sentencer tagging of public PMID abstracts. Open and publicly available to the global community.2.24 Malo332023-11-24Developing
LitCovid-PD-MONDO 2.26 MJin-Dong Kim2023-11-24
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCovid-PMC-OGER-BB Annotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)3.14 MFabio RinaldiNico Colic2023-11-24Developing
PubCasesHPO HPO annotation in PubCases3.18 MToyofumi Fujiwara2023-11-24Beta
TEST0 3.37 MYue Wang2023-11-24
PubTatorOnTogoVar 3.37 MPubTator teamYasunori Yamamoto2025-10-22Developing
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
CORD-19_Custom_license_subset The Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.5.08 MJin-Dong Kim2023-11-24Released
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
LitCovid-PubTator 5.88 MJin-Dong Kim2023-11-24Beta
CORD-19-PD-MONDO PubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 MJin-Dong Kim2023-11-27Released
sentences Sentence segmentation annotation. Automatic annotation by TextSentencer.6.96 MDBCLSJin-Dong Kim2024-12-01Developing
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
MyTest 9.81 MJin-Dong Kim2025-11-28Testing
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
CORD-19-Sentences 13.4 MJin-Dong Kim2023-11-24Testing
NameT# Ann. AuthorMaintainerUpdated_atStatus

641-660 / 663 show all
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
Anatomy-UBERON 2.12 MJin-Dong Kim2024-09-19Developing
NEUROSES 2.14 Mnestoralvaro2023-11-24Beta
PMID_GLOBAL 2.24 Malo332023-11-24Developing
LitCovid-PD-MONDO 2.26 MJin-Dong Kim2023-11-24
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCovid-PMC-OGER-BB 3.14 MFabio RinaldiNico Colic2023-11-24Developing
PubCasesHPO 3.18 MToyofumi Fujiwara2023-11-24Beta
TEST0 3.37 MYue Wang2023-11-24
PubTatorOnTogoVar 3.37 MPubTator teamYasunori Yamamoto2025-10-22Developing
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
CORD-19_Custom_license_subset 5.08 MJin-Dong Kim2023-11-24Released
LitCovid-sentences 5.63 MJin-Dong Kim2023-11-24Developing
LitCovid-PubTator 5.88 MJin-Dong Kim2023-11-24Beta
CORD-19-PD-MONDO 6.32 MJin-Dong Kim2023-11-27Released
sentences 6.96 MDBCLSJin-Dong Kim2024-12-01Developing
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
MyTest 9.81 MJin-Dong Kim2025-11-28Testing
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
CORD-19-Sentences 13.4 MJin-Dong Kim2023-11-24Testing