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NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

521-540 / 593 show all
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
NGLY1-deficiency A collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 KJin-Dong Kim2023-11-29Developing
Preeclampsia-compare 67.2 KJin-Dong Kim2023-11-29Testing
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2023-11-27Developing
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 78.9 KGENIA ProjectYue Wang2023-11-29Released
GlyCosmos6-Glycan-Motif-Image 87.8 KJin-Dong Kim2024-07-30Developing
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
UCDIT_TEST colitis link91.6 Kalo332023-11-27Testing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2023-11-29Testing
oger-json-test Test corpus for testing OGER web service97.6 KNico Colic2023-11-29Testing
c_corpus Documents included in the c_corpus: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv107 K2023-11-29Released
GlyCosmos6-Glycan-Motif-Structure Automatic annotation by Covid-19_Glycan-Motif.107 KJin-Dong Kim2024-07-25Developing
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2023-11-28Beta
PubMed_Structured_Abstracts Sections (zones) as retrieved from PubMed.131 Kzebet2023-11-28Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2023-11-28Developing
OryzaGP_2021_v2 OryzaGP_2021_v2 will use a second annotator 208 Klarmande2023-11-29Developing
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
NameT# Ann. AuthorMaintainerUpdated_atStatus

521-540 / 593 show all
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
NGLY1-deficiency 60.5 KJin-Dong Kim2023-11-29Developing
Preeclampsia-compare 67.2 KJin-Dong Kim2023-11-29Testing
CORD-PICO 69.6 KSimon Susterssuster2023-11-27Developing
GENIAcorpus 78.9 KGENIA ProjectYue Wang2023-11-29Released
GlyCosmos6-Glycan-Motif-Image 87.8 KJin-Dong Kim2024-07-30Developing
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
UCDIT_TEST 91.6 Kalo332023-11-27Testing
GlycoBiology-FMA 96.3 KJin-Dong Kim2023-11-29Testing
oger-json-test 97.6 KNico Colic2023-11-29Testing
c_corpus 107 K2023-11-29Released
GlyCosmos6-Glycan-Motif-Structure 107 KJin-Dong Kim2024-07-25Developing
LitCovid-PAS-Enju 125 KJin-Dong Kim2023-11-28Beta
PubMed_Structured_Abstracts 131 Kzebet2023-11-28Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
pmc-enju-pas 205 KDBCLSJin-Dong Kim2023-11-28Developing
OryzaGP_2021_v2 208 Klarmande2023-11-29Developing
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released