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NameTDescription# Ann.Author MaintainerUpdated_atStatus

41-60 / 593 show all
semrep-sample Sample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
NCBIDiseaseCorpus The NCBI disease corpus is fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
OryzaGP_2020_TO-all 0Pierre Larmandelarmande2023-11-29Developing
OryzaGP_2021 Updating OryzaGP1.08 MPierre Larmandelarmande2023-11-28Developing
OryzaGP_2020 OryzaGP is a dataset of pubmed abstract related to Oryza sativa species0Pierre Larmandelarmande2023-11-29Developing
ENG_NER_NEL_pruas 582Pedro Ruaspruas_182023-11-30Developing
PT_NER_NEL_pruas 334Pedro Ruaspruas_182023-11-30Uploading
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
BLAH2015_Annotations_test_5 1.34 Knestoralvaronestoralvaro2023-11-30Testing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
bionlp-st-pc-2013-training The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013. The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component.7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
bionlp-st-cg-2013-training The training dataset from the cancer genetics task in the BioNLP Shared Task 2013. Composed of anatomical and molecular entities.10.9 KNaCTeMYue Wang2023-11-28Released
AnEM_full-texts 250 documents selected randomly from full-text papers Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_abstracts, it is probably the largest manually annotated corpus on anatomical entities.687NaCTeMYue Wang2023-11-29Uploading
NameT# Ann.Author MaintainerUpdated_atStatus

41-60 / 593 show all
semrep-sample 11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
NCBIDiseaseCorpus 6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
OryzaGP_2020_TO-all 0Pierre Larmandelarmande2023-11-29Developing
OryzaGP_2021 1.08 MPierre Larmandelarmande2023-11-28Developing
OryzaGP_2020 0Pierre Larmandelarmande2023-11-29Developing
ENG_NER_NEL_pruas 582Pedro Ruaspruas_182023-11-30Developing
PT_NER_NEL_pruas 334Pedro Ruaspruas_182023-11-30Uploading
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
BLAH2015_Annotations_test_5 1.34 Knestoralvaronestoralvaro2023-11-30Testing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
bionlp-st-pc-2013-training 7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
bionlp-st-cg-2013-training 10.9 KNaCTeMYue Wang2023-11-28Released
AnEM_full-texts 687NaCTeMYue Wang2023-11-29Uploading