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NameTDescription# Ann.Author MaintainerUpdated_atStatus

561-580 / 590 show all
PMA_Manual Manually annotated examples of medical device PMA approval statements204Stefano Rensitherightstef2023-11-27Developing
blah6_medical_device BLAH6 hackathon project to annotate medical device indications in premarket approval statement summaries. The documents in this project serve as a corpus of premarket approval (PMA) statements that have undergone quality control. In particular, we have (1) removed non-ascii characters, (2) fixed some text segmentation errors, and (3) fixed some capitalization errors.0Stefano Rensitherightstef2023-11-29Beta
PMA_MER PMAs annotated using MERpy.58.9 KStefano Rensitherightstef2023-11-29Developing
Ab3P-abbreviations This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
tagtog OpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
tagtog-test Test project only for tagtog submissions0tagtogtagtog2023-11-29Testing
Test190926 test0Takeru Nakazatonakazato2023-11-29Testing
AIMed The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
infoMED_PsA testing45Timmtimmo2023-11-30Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
Glycobiology-GlycanName 946Toshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
BioLarkPubmedHPO 228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.16 KTudor Grozasimon2023-11-29Released
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
PIR-corpus1 The Protein Information Resource (PIR) is not biased towards any particular biomedical domain, and is expected to provide more diverse protein names in a given sample size. Annotation category: protein, compound-protein, acronym.4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
PIR-corpus2 The protein tag was used to tag proteins, or protein-associated or -related objects, such as domains, pathways, expression of gene. Annotation guideline: http://pir.georgetown.edu/pirwww/about/doc/manietal.pdf5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released
NameT# Ann.Author MaintainerUpdated_atStatus

561-580 / 590 show all
PMA_Manual 204Stefano Rensitherightstef2023-11-27Developing
blah6_medical_device 0Stefano Rensitherightstef2023-11-29Beta
PMA_MER 58.9 KStefano Rensitherightstef2023-11-29Developing
Ab3P-abbreviations 2.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
tagtog 0tagtogtagtog2015-02-23Developing
tagtog-test 0tagtogtagtog2023-11-29Testing
Test190926 0Takeru Nakazatonakazato2023-11-29Testing
AIMed 4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
infoMED_PsA 45Timmtimmo2023-11-30Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
Glycobiology-GlycanName 946Toshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
BioLarkPubmedHPO 7.16 KTudor Grozasimon2023-11-29Released
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
PIR-corpus1 4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
PIR-corpus2 5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released