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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

161-180 / 238 show all
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2023-11-27Developing
OryzaGP_2021 Updating OryzaGP1.08 MPierre Larmandelarmande2023-11-28Developing
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.7 Kcallahan_tiff2023-11-29Developing
LitCovid-PD-GO-BP Terms for biological prosesses, as defined in GO374 KJin-Dong Kim2023-11-29Developing
UBERON-AE Annotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.859 KDBCLSJin-Dong Kim2023-11-29Developing
GlyCosmos600-Glycan-Motif-Structure 919Jin-Dong Kim2023-11-29Developing
oger-json-test Test corpus for testing OGER web service97.6 KNico Colic2023-11-29Testing
chemicals 0pruas_182023-11-29Uploading
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCovid-PD-CHEBI 1.43 MJin-Dong Kim2023-11-24Developing
PubMed_ArguminSci Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci).777 Kzebet2023-11-24Released
LitCovid-PD-FMA-UBERON 1.3 MJin-Dong Kim2023-11-28Developing
NGLY1-deficiency A collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 KJin-Dong Kim2023-11-29Developing
preeclampsia_genes 17.8 KJin-Dong Kim2023-11-29Developing
Preeclampsia-compare 67.2 KJin-Dong Kim2023-11-29Testing
pubmed-enju-pas Annotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 MEnjuJin-Dong Kim2023-11-24Developing
NameT # Ann.AuthorMaintainerUpdated_atStatus

161-180 / 238 show all
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
CORD-PICO 69.6 KSimon Susterssuster2023-11-27Developing
OryzaGP_2021 1.08 MPierre Larmandelarmande2023-11-28Developing
spacy-test 131 KNico ColicNico Colic2023-11-29Released
Preeclampsia 58.7 Kcallahan_tiff2023-11-29Developing
LitCovid-PD-GO-BP 374 KJin-Dong Kim2023-11-29Developing
UBERON-AE 859 KDBCLSJin-Dong Kim2023-11-29Developing
GlyCosmos600-Glycan-Motif-Structure 919Jin-Dong Kim2023-11-29Developing
oger-json-test 97.6 KNico Colic2023-11-29Testing
chemicals 0pruas_182023-11-29Uploading
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
LitCovid-PD-CLO 3.73 MJin-Dong Kim2023-11-24Developing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCovid-PD-CHEBI 1.43 MJin-Dong Kim2023-11-24Developing
PubMed_ArguminSci 777 Kzebet2023-11-24Released
LitCovid-PD-FMA-UBERON 1.3 MJin-Dong Kim2023-11-28Developing
NGLY1-deficiency 60.5 KJin-Dong Kim2023-11-29Developing
preeclampsia_genes 17.8 KJin-Dong Kim2023-11-29Developing
Preeclampsia-compare 67.2 KJin-Dong Kim2023-11-29Testing
pubmed-enju-pas 19.1 MEnjuJin-Dong Kim2023-11-24Developing