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NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 239 show all
geneset_names 0alo332022-04-26Released
Inflammaging Inflammation axis23.4 Malo332023-11-24Released
CORD-19_Custom_license_subset The Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.5.08 MJin-Dong Kim2023-11-24Released
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
CORD-19-PD-UBERON PubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is disease term annotation based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.42 MJin-Dong Kim2023-11-24Released
PubMed_ArguminSci Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci).777 Kzebet2023-11-24Released
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
CORD-19-PD-MONDO PubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 MJin-Dong Kim2023-11-27Released
LitCovid-PD-FMA-UBERON-v1 PubDictionaries annotation for anatomy terms - updated at 2020-04-20 Disease term annotation based on FMA and Uberon. Version 2020-04-20. The terms in FMA and Uberon are loaded in PubDictionaries (FMA and Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here for FMA and there for Uberon. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.4.3 KJin-Dong Kim2023-11-27Released
LitCovid-PubTatorCentral Named-entities for the documents in the LitCovid dataset. Annotations were automatically predicted by the PubTatorCentral tool (https://www.ncbi.nlm.nih.gov/research/pubtator/)4.64 Kzebet2023-11-27Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
Zoonoses_partialAnnotation This is a part of Zoonoses project used by PanZoora. But Zoonoses project provides whole manual annotated data but this is partial ones.266AikoHIRAKI2023-11-27Released
LitCovid-sentences-v1 Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 KJin-Dong Kim2023-11-27Released
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2023-11-28Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
CORD-19-PD-HP PubDictionaries annotation for HP terms - updated at 2020-04-30 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.15 MJin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
TEST-DiseaseOrPhenotypicFeature Annotated by Mesh_All_FN795Eisuke Dohi2023-11-29Released
LitCovid-PD-HP-v1 PubDictionaries annotation for human phenotype terms - updated at 2020-04-20 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.3.03 KJin-Dong Kim2023-11-29Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 239 show all
geneset_names 0alo332022-04-26Released
Inflammaging 23.4 Malo332023-11-24Released
CORD-19_Custom_license_subset 5.08 MJin-Dong Kim2023-11-24Released
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
CORD-19-PD-UBERON 1.42 MJin-Dong Kim2023-11-24Released
PubMed_ArguminSci 777 Kzebet2023-11-24Released
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
CORD-19-PD-MONDO 6.32 MJin-Dong Kim2023-11-27Released
LitCovid-PD-FMA-UBERON-v1 4.3 KJin-Dong Kim2023-11-27Released
LitCovid-PubTatorCentral 4.64 Kzebet2023-11-27Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
Zoonoses_partialAnnotation 266AikoHIRAKI2023-11-27Released
LitCovid-sentences-v1 16.5 KJin-Dong Kim2023-11-27Released
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2023-11-28Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
CORD-19-PD-HP 1.15 MJin-Dong Kim2023-11-29Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
TEST-DiseaseOrPhenotypicFeature 795Eisuke Dohi2023-11-29Released
LitCovid-PD-HP-v1 3.03 KJin-Dong Kim2023-11-29Released