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PMC:7402624 / 35591-36502 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T327 130-135 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T328 153-158 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T329 166-171 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T330 202-207 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T331 300-303 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T332 319-324 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T333 340-343 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T334 359-364 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T335 692-695 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T336 711-716 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1291 124-127 Gene denotes CD8 Gene:925
1292 147-150 Gene denotes CD4 Gene:920
1293 307-311 Gene denotes CD38 Gene:952
1294 313-316 Gene denotes CD4 Gene:920
1295 347-351 Gene denotes CD38 Gene:952
1296 353-356 Gene denotes CD8 Gene:925
1297 699-703 Gene denotes CD38 Gene:952
1298 705-708 Gene denotes CD4 Gene:920
1299 222-230 Species denotes patients Tax:9606
1300 461-469 Species denotes patients Tax:9606
1301 740-748 Species denotes patients Tax:9606
1302 373-376 Chemical denotes PBs MESH:D007854
1303 724-727 Chemical denotes PBs MESH:D007854
1304 213-221 Disease denotes COVID-19 MESH:C000657245
1305 409-411 Disease denotes HD MESH:D006816
1306 452-460 Disease denotes COVID-19 MESH:C000657245
1307 731-739 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T285 213-221 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T286 409-411 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T287 438-440 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T288 452-460 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T289 731-739 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T596 84-85 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T597 124-127 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T598 128-135 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T599 141-158 http://purl.obolibrary.org/obo/CL_0000895 denotes naïve CD4 T cells
T600 164-171 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T601 202-207 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T602 287-288 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T603 307-311 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T604 313-316 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T605 317-324 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T606 347-351 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T607 353-356 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T608 357-364 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T609 438-440 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T610 586-590 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T611 699-703 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T612 705-708 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T613 709-716 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T257 304-306 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T258 344-346 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T259 402-407 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T260 409-411 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T261 431-436 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T262 438-440 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T263 696-698 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T78 39-55 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T206 0-82 Sentence denotes Fig. 5 Temporal relationships between immune responses and disease manifestation.
T207 83-270 Sentence denotes (A) Global viSNE projection of non-naïve CD8 T cells, non-naïve CD4 T cells, and B cells for all subjects pooled, with cells from COVID-19 patients at D0 and D7 concatenated and overlaid.
T208 271-542 Sentence denotes Frequencies of (B) KI67+ and HLA-DR+CD38+ CD4 T cells, (C) KI67+ and HLA-DR+CD38+ CD8 T cells, or (D) PBs as indicated for healthy donor (HD; green), recovered donor (RD; blue), or COVID-19 patients (red) with paired samples at D0 and D7 indicated by the connecting line.
T209 543-648 Sentence denotes Significance determined by paired Wilcoxon test: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001.
T210 649-911 Sentence denotes Longitudinal patterns (see Methods) of (E) HLA-DR+CD38+ CD4 T cells or (F) PBs in COVID-19 patients shown as frequency and representative flow cytometry plots. (G) Spearman correlations of clinical parameters with longitudinal fold changes in immune populations.