> top > annotators

Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainer Updated_at

1-20 / 81 show all
Cellosaurus_v33 Annotator based on dictionary Cellosaurus version 33 in PubDictionarieszebet2020-04-15
Cellosaurus_v35 Annotator based on dictionary Cellosaurus version 35 in PubDictionarieszebet2020-08-12
PTO-exact Yue Wang2019-12-03
PTO-all Yue Wang2019-12-03
PD-MeSH2022_C_F03_plus_allFN-B MeSH2022 C and F03, plus all false negativesyucca2021-12-22
PD-MeSH2022_C_and_F03_plus_FN-B MeSH C and F03 terms + FNs of PD_MeSH2022_C_and_F03-B that appear in two or more documentsyucca2021-12-22
PD_CHEBI_minus_symbols-B CHEBI manually tunedyucca2021-12-23
PD-MeSH2022_C_and_F03-B MeSH 2022 Disease (C) + Mental Disorder (F03)yucca2021-12-22
PD-MeSH2022_CHEBI_tuned-B MeSH2022Chemical (Descriptors and Supplementary Concepts that have Tree Numbers beginning with D but not not D12, D13 or D17)+ CHEBI (excluding terms that match (\W|\d)*|\W*\w\W* , manually tuned yucca2021-12-23
AnnotaionByMondo_095 Yasunori Yamamoto2021-12-23
AnnotationByCellosaurus Yasunori Yamamoto2021-12-23
Regulation_new3 xiajingbo2021-07-07
Regulation_new xiajingbo2021-07-07
OntoGeneER OntoGene Entity RecognitionNico Colic2023-05-31
PD-ORYZAGP Annotator based on PubDictionary OryzaGP Oryzabase URIlarmande2021-01-26
PD-ORYZAGP-UNIPROT-B use dictionary of rice gene mentions with UniProt Urislarmande2021-01-29
PD-ORYZAGP-B larmande2021-01-26
PD-ORYZAGP-RAPDB-SYMB larmande2021-07-08
PD-ORYZAGP-UNIPROT use dictionary with rice gene mention and UniProt URIslarmande2021-07-07
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22