| AIMed | | The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation.
Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf | 4.04 K | The University of Texas at Austin | Yue Wang | 2023-11-27 | Testing | |
| GlyCosmos600-GlycoEpitope | | | 277 | | Jin-Dong Kim | 2023-11-27 | Testing | |
| example-dialog | | | 0 | | Jin-Dong Kim | 2023-11-27 | Testing | |
| Glycobiology-GlycanName | | | 946 | Toshihide Shikanai | shikanai | 2023-11-27 | Testing | |
| disease_gene_microbe_small | | Small version (48 abstract that mention both Crohns and S. aureus) for development purposes
Abbreviation: dgm Content: annotated abstracts on Crohn’s disease or on on Staphylococcus aureus (according to the jensenlab.org indexing resources) Entity types: (three for a start, organisms (NCBI Taxonomy taxa), disease (Disease Ontology terms), human genes (ENSEMBL proteins) Aim: Explore indirect associations of diseases to microbial species in this corpus via gene co-mentions | 536 | | evangelos | 2023-11-27 | Testing | |
| taxonomy | | | 10 | | rdmpage | 2023-11-27 | Testing | |
| pubtator-sample | | Sample annotation of PubTator produced by Zhiyong Lu et al. | 28 | Zhiyong Lu | Jin-Dong Kim | 2023-11-27 | Testing | |
| GlycoBiology-PACDB | | cGGDB-based annotation to GlycoBiology abstracts | 3.03 K | Toshihide Shikanai | shikanai | 2023-11-27 | Testing | |
| Colil | | Colil (Comments on Literature in Literature) is a search service for citation contexts utilized in the biomedical domain. Colil searches for a cited paper in the Colil database and then returns a list of the citation contexts for it and its relevant papers based on co-citations. | 3.34 K | DBCLS | Toyofumi Fujiwara | 2023-11-28 | Testing | |
| Parkinson | | | 54 | | Jin-Dong Kim | 2023-11-28 | Testing | |
| Testing | | Testing | 241 | Hyun-Seok Park | hsp20 | 2023-11-28 | Testing | |
| GlycoBiology-cGGDB | | cGGDB-based annotation to GlycoBiology abstracts | 36 | Toshihide Shikanai | shikanai | 2023-11-28 | Testing | |
| LitCoin_Mondo | | | 1.96 K | | Yasunori Yamamoto | 2023-11-28 | Testing | |
| blah6 | | device Annotator | 374 | | slee7268 | 2023-11-28 | Testing | |
| BioASQ-sample | | collection of PubMed articles which appear in the BioASQ sample data set. | 0 | BioASQ | Jin-Dong Kim | 2023-11-28 | Testing | |
| LitCovid-docs | | Updated at 2021-01-12
A comprehensive literature resource on the subject of Covid-19 is collected by NCBI:
https://www.ncbi.nlm.nih.gov/research/coronavirus/
The LitCovid project@PubAnnotation is a collection of the titles and abstracts of the LitCovid dataset, for the people who want to perform text mining analysis. Please note that if you produce some annotation to the documents in this project, and contribute the annotation back to PubAnnotation, it will become publicly available together with contribution from other people.
If you want to contribute your annotation to PubAnnotation, please refer to the documentation page:
http://www.pubannotation.org/docs/submit-annotation/
The list of the PMID is sourced from here
The 6 entries of the following PMIDs could not be included because they were not available from PubMed:32161394,
32104909,
32090470,
32076224,
32161394
32188956,
32238946.
Below is a notice from the original LitCovid dataset:
PUBLIC DOMAIN NOTICE
National Center for Biotechnology Information
This software/database is a "United States Government Work" under the
terms of the United States Copyright Act. It was written as part of
the author's official duties as a United States Government employee and
thus cannot be copyrighted. This software/database is freely available
to the public for use. The National Library of Medicine and the U.S.
Government have not placed any restriction on its use or reproduction.
Although all reasonable efforts have been taken to ensure the accuracy
and reliability of the software and data, the NLM and the U.S.
Government do not and cannot warrant the performance or results that
may be obtained by using this software or data. The NLM and the U.S.
Government disclaim all warranties, express or implied, including
warranties of performance, merchantability or fitness for any particular
purpose.
Please cite the authors in any work or product based on this material :
Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193
| 18 | | Jin-Dong Kim | 2023-11-28 | Testing | |
| GlyCosmos600-GlycoGenes | | | 87 | | Jin-Dong Kim | 2023-11-28 | Testing | |
| ykjeong_test | | pub_annotation_test | 276 | | | 2023-11-28 | Testing | |
| glycosmos-test-glycan-structure | | | 448 | | ISSAKU YAMADA | 2023-11-28 | Testing | |
| GlyCosmos600-CLO | | | 1.73 K | | Jin-Dong Kim | 2023-11-28 | Testing | |
