> top > projects

Projects

NameTDescription# Ann.AuthorMaintainer Updated_atStatus

21-40 / 593 show all
LitCovid-PubTatorCentral Named-entities for the documents in the LitCovid dataset. Annotations were automatically predicted by the PubTatorCentral tool (https://www.ncbi.nlm.nih.gov/research/pubtator/)4.64 Kzebet2023-11-27Released
Goldhamster2_CellLineAnn 618zebet2023-11-29Developing
SMAFIRA_Methods Predictions for methods for the SMAFIRA project.0zebet2023-11-28Developing
SMAFIRA-Case-Studies-16850029 From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv0zebet2023-11-30Developing
SMAFIRA-Case-Studies-19735549 From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv0zebet2023-11-30Developing
RELISH-DB Abstracts contained in the data of the RELISH-DB (https://relishdb.ict.griffith.edu.au) made available for download here. Data was downloaded from here: https://figshare.com/projects/RELISH-DB/60095 Related publication: https://academic.oup.com/database/article/doi/10.1093/database/baz085/5608006#20072202302023-11-29Released
Goldhamster2_Cellosaurus 27.5 Kzebet2023-11-29Developing
LitCovid-ArguminSci Discourse elements for the documents in the LitCovid dataset. Annotations were automatically predicted by the ArguminSci tool (https://github.com/anlausch/ArguminSci)4.9 Kzebet2023-11-27Released
funRiceGenes-exact 841Yue Wang2023-11-28Developing
0mytest 144Yue Wang2023-11-29
bionlp-st-pc-2013-training The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013. The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component.7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
bionlp-st-epi-2011-training The training dataset from the Epigenetics and Post-translational Modifications (EPI) task in the BioNLP Shared Task 2011. The core entities of the task are genes and gene products (RNA and proteins), identified in the data simply as "Protein" annotations. 7.59 KGENIAYue Wang2023-11-29Released
bionlp-st-cg-2013-training The training dataset from the cancer genetics task in the BioNLP Shared Task 2013. Composed of anatomical and molecular entities.10.9 KNaCTeMYue Wang2023-11-28Released
PIR-corpus1 The Protein Information Resource (PIR) is not biased towards any particular biomedical domain, and is expected to provide more diverse protein names in a given sample size. Annotation category: protein, compound-protein, acronym.4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
2_test 145 MYue Wang2023-11-24
SCAI-Test A small corpus for the evaluation of dictionaries containing chemical entities. Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html1.21 KCALBC ProjectYue Wang2023-11-28Released
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
AIMed The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
NameT# Ann.AuthorMaintainer Updated_atStatus

21-40 / 593 show all
LitCovid-PubTatorCentral 4.64 Kzebet2023-11-27Released
Goldhamster2_CellLineAnn 618zebet2023-11-29Developing
SMAFIRA_Methods 0zebet2023-11-28Developing
SMAFIRA-Case-Studies-16850029 0zebet2023-11-30Developing
SMAFIRA-Case-Studies-19735549 0zebet2023-11-30Developing
RELISH-DB 02023-11-29Released
Goldhamster2_Cellosaurus 27.5 Kzebet2023-11-29Developing
LitCovid-ArguminSci 4.9 Kzebet2023-11-27Released
funRiceGenes-exact 841Yue Wang2023-11-28Developing
0mytest 144Yue Wang2023-11-29
bionlp-st-pc-2013-training 7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
bionlp-st-epi-2011-training 7.59 KGENIAYue Wang2023-11-29Released
bionlp-st-cg-2013-training 10.9 KNaCTeMYue Wang2023-11-28Released
PIR-corpus1 4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
2_test 145 MYue Wang2023-11-24
SCAI-Test 1.21 KCALBC ProjectYue Wang2023-11-28Released
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
AIMed 4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing