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NameTDescription# Ann.AuthorMaintainer Updated_atStatus

181-200 / 556 show all
PathNERGold Gold standard used for training PathNER0Chengkin Wunikolamilosevic2023-11-29Developing
WikiPainGoldStandard Wiki-pain contains molecular interactions that are relevant to pain.878Daniel Jamiesonnikolamilosevic2023-11-28Developing
LitCovid-PMC-OGER-BB Annotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)3.14 MFabio RinaldiNico Colic2023-11-24Developing
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
PA-LLM 🖐️ LLMs for biomedical text summarisation0Nico Colic2024-01-19Developing
LitCovid-OGER-BB Using OGER (www.ontogene.com) and Biobert to obtain annotations for 10 different vocabularies.308 KFabio RinaldiNico Colic2023-11-28Released
LitCovid-OGER Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 KFabio RinaldiNico Colic2023-11-29Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
oger-json-test Test corpus for testing OGER web service97.6 KNico Colic2023-11-29Testing
2015-BEL-Sample-2 The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 KFabio RinaldiNico Colic2023-11-28Released
tees-test Random PMC document used for testing during the development of a RESTful TEES parsing web service.3.39 KNico ColicNico Colic2023-11-24Developing
PA-LLM-test 0Nico Colic2024-01-19Testing
acggdb_ggdb 0nfujita2023-11-29
BLAH2015_Annotations_test_5 1.34 Knestoralvaronestoralvaro2023-11-30Testing
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.14 Mnestoralvaro2023-11-24Beta
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
Text-Annotation 02022-01-17
bayaba nalee7Nakyolee2023-11-29
NameT# Ann.AuthorMaintainer Updated_atStatus

181-200 / 556 show all
PathNERGold 0Chengkin Wunikolamilosevic2023-11-29Developing
WikiPainGoldStandard 878Daniel Jamiesonnikolamilosevic2023-11-28Developing
LitCovid-PMC-OGER-BB 3.14 MFabio RinaldiNico Colic2023-11-24Developing
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
PA-LLM 0Nico Colic2024-01-19Developing
LitCovid-OGER-BB 308 KFabio RinaldiNico Colic2023-11-28Released
LitCovid-OGER 9.31 KFabio RinaldiNico Colic2023-11-29Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
oger-json-test 97.6 KNico Colic2023-11-29Testing
2015-BEL-Sample-2 11.4 KFabio RinaldiNico Colic2023-11-28Released
tees-test 3.39 KNico ColicNico Colic2023-11-24Developing
PA-LLM-test 0Nico Colic2024-01-19Testing
acggdb_ggdb 0nfujita2023-11-29
BLAH2015_Annotations_test_5 1.34 Knestoralvaronestoralvaro2023-11-30Testing
NEUROSES 2.14 Mnestoralvaro2023-11-24Beta
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2023-11-29Testing
Text-Annotation 02022-01-17
bayaba 7Nakyolee2023-11-29