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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

401-420 / 593 show all
bionlp-ost-19-SeeDev-bin-dev 2.58 Kldeleger2023-11-28Developing
Glycosmos6-GlycoEpitope Automatic annotation by PD-GlycoEpitope.19.9 KJin-Dong Kim2023-11-28Developing
LitCovid-sample-PD-UBERON PubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is annotation for anatomical entities based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. 310Jin-Dong Kim2023-11-28Beta
SPECIES800 SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
SMAFIRA_Methods Predictions for methods for the SMAFIRA project.0zebet2023-11-28Developing
ykjeong_test pub_annotation_test2762023-11-28Testing
Lectin 3.52 Kangata2023-11-28
SMAFIRA_OGER_TEXT 116zebet2023-11-28Developing
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2023-11-28Beta
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
PubMed_Structured_Abstracts Sections (zones) as retrieved from PubMed.131 Kzebet2023-11-28Released
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2023-11-28Developing
GlyCosmos600-GlycoGenes 87Jin-Dong Kim2023-11-28Testing
2015-BEL-Sample-2 The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 KFabio RinaldiNico Colic2023-11-28Released
PGR-NEG Identification of Negative Relations 23Diana Sousadpavot2023-11-28Developing
Minna_de_Honkoku An annotation project for Minna de Honkoku, a crowdsourced transcription project for historical Japanese documents..204Yuta Hashimotoyhashimoto2023-11-28Developing
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
LitCovid-docs Updated at 2021-01-12 A comprehensive literature resource on the subject of Covid-19 is collected by NCBI: https://www.ncbi.nlm.nih.gov/research/coronavirus/ The LitCovid project@PubAnnotation is a collection of the titles and abstracts of the LitCovid dataset, for the people who want to perform text mining analysis. Please note that if you produce some annotation to the documents in this project, and contribute the annotation back to PubAnnotation, it will become publicly available together with contribution from other people. If you want to contribute your annotation to PubAnnotation, please refer to the documentation page: http://www.pubannotation.org/docs/submit-annotation/ The list of the PMID is sourced from here The 6 entries of the following PMIDs could not be included because they were not available from PubMed:32161394, 32104909, 32090470, 32076224, 32161394 32188956, 32238946. Below is a notice from the original LitCovid dataset: PUBLIC DOMAIN NOTICE National Center for Biotechnology Information This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose. Please cite the authors in any work or product based on this material : Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 18Jin-Dong Kim2023-11-28Testing
LitCovid-PAS-Enju Predicate-argument structure annotation produced by the Enju parser.125 KJin-Dong Kim2023-11-28Beta
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing
NameT# Ann.AuthorMaintainerUpdated_at Status

401-420 / 593 show all
bionlp-ost-19-SeeDev-bin-dev 2.58 Kldeleger2023-11-28Developing
Glycosmos6-GlycoEpitope 19.9 KJin-Dong Kim2023-11-28Developing
LitCovid-sample-PD-UBERON 310Jin-Dong Kim2023-11-28Beta
SPECIES800 3.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2023-11-28Released
SMAFIRA_Methods 0zebet2023-11-28Developing
ykjeong_test 2762023-11-28Testing
Lectin 3.52 Kangata2023-11-28
SMAFIRA_OGER_TEXT 116zebet2023-11-28Developing
LitCovid-sample-PD-FMA 1.93 KJin-Dong Kim2023-11-28Beta
bionlp-ost-19-BB-rel-ner-train 3.62 Kldeleger2023-11-28Developing
PubMed_Structured_Abstracts 131 Kzebet2023-11-28Released
pmc-enju-pas 205 KDBCLSJin-Dong Kim2023-11-28Developing
GlyCosmos600-GlycoGenes 87Jin-Dong Kim2023-11-28Testing
2015-BEL-Sample-2 11.4 KFabio RinaldiNico Colic2023-11-28Released
PGR-NEG 23Diana Sousadpavot2023-11-28Developing
Minna_de_Honkoku 204Yuta Hashimotoyhashimoto2023-11-28Developing
SMAFIRA_Feedback_Research_Goal 15zebet2023-11-28Released
LitCovid-docs 18Jin-Dong Kim2023-11-28Testing
LitCovid-PAS-Enju 125 KJin-Dong Kim2023-11-28Beta
bionlp-ost-19-BB-rel-train 3.52 Kldeleger2023-11-28Developing