| uniprot-mouse | | Protein annotation based on UniProt | 11.5 K | | Jin-Dong Kim | 2023-11-28 | Developing | |
| Grays_part2_test | | | 8.57 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| LitCovid-PD-MONDO-v1 | | PubDictionaries annotation for disease terms - updated at 2020-04-20
It is based on MONDO Version 2020-04-20.
The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here.
Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. | 13.4 K | | Jin-Dong Kim | 2023-11-29 | Released | |
| GlyCosmos600-docs | | A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled. | 0 | | Jin-Dong Kim | 2023-11-29 | Released | |
| GlyCosmos600-GlycanStructure | | | 97 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| sonoma | | _ | 19.3 K | Standigm | | 2023-11-24 | Testing | |
| GlycoBiology-GDGDB | | GDGDB-based annotation to GlycoBiology abstracts | 2.46 K | Toshihide Shikanai | shikanai | 2023-11-29 | Testing | |
| LitCoin-Disease-MeSH | | MeSH C and F03, plus false negatives that appear in two or more documents in LitCoin-entities | 3.56 K | | yucca | 2023-11-29 | Testing | |
| LitCovid-sample-GO-BP | | | 691 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| Goldhamster2_Cellosaurus | | | 27.5 K | | zebet | 2023-11-29 | Developing | |
| PT_NER_NEL | | Annotations in Portuguese COVID-19 related abstracts from MeSH terminology | 245 | LASIGE-DeST | pruas_18 | 2023-11-29 | Developing | |
| DisGeNet-2017-sample | | | 2.93 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| test_disfluency_annotation_auto_jp | | | 0 | | Jin-Dong Kim | 2023-12-28 | Testing | |
| 0mytest | | | 144 | | Yue Wang | 2023-11-29 | | |
| glycosmos-test-glycan-structure | | | 448 | | ISSAKU YAMADA | 2023-11-28 | Testing | |
| UseCases_PubTatorCentral | | Predictions from PubTator Central (https://www.ncbi.nlm.nih.gov/research/pubtator/) for the seven datasets and for four entity types (disease,chemical,species,cellline) | 0 | | zebet | 2023-11-29 | Developing | |
| LitCovid-sample-Glycan | | | 3.21 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| pubmed-2016 | | abstracts published in 2016 | 0 | | Jin-Dong Kim | 2023-11-28 | | |
| CORD-19-sample-CHEBI | | | 16 | | Jin-Dong Kim | 2023-11-29 | Developing | |
| performance-test | | a project for performance test | 480 K | | Jin-Dong Kim | 2023-11-27 | Testing | |
