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Projects

NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

61-80 / 238 show all
Inflammaging Inflammation axis23.4 Malo332023-11-24Released
biomarkers IL/TNF biomarkers857 Kalo332023-11-24
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
LitCoin-GeneOrGeneProduct-v0 https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 KJin-Dong Kim2023-11-29
PubCasesHPO HPO annotation in PubCases3.18 MToyofumi Fujiwara2023-11-24Beta
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2023-11-29Testing
GlyCosmos600-GlycoProteins GlycoProtein annotations were made using the glycoprotein-name dictionary on PubDictionaries: http://pubannotation.org/projects/GlyCosmos600-docs The documents were imported from the GlyCosmos600-docs project: http://pubannotation.org/projects/GlyCosmos600-docs3.68 KJin-Dong Kim2023-11-27Testing
GlycoBiology-Epitope GlycoEpitope-based annotation to GlycoBiology abstracts3.18 KShujiro Okudashuo502023-11-29Testing
PMID_GLOBAL Global sentencer tagging of public PMID abstracts. Open and publicly available to the global community.2.24 Malo332023-11-24Developing
LitCoin-GeneOrGeneProduct-v3 GeneOrGeneProduct after false positive control4.67 KJin-Dong Kim2023-11-24
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2023-11-29Testing
LitCoin-MeSH-Disease-2 Flase Negative全部入れてみた4.08 Kyucca2023-11-29
ENG_RE Entities and relations annotations from the following ontologies: Disease Ontology ('DO'), Gene Ontology ('GO'), Human Phenotype Ontology ('HPO'), and ChEBI ontology ('CHEBI').224Diana Sousadpavot2023-11-29Developing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCoin-MONDO_bioort2019 DiseaeseOrPhenotypicFeature3.72 KEisuke Dohi2023-11-29Testing
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
NameT# Ann.AuthorMaintainerUpdated_atStatus

61-80 / 238 show all
Inflammaging 23.4 Malo332023-11-24Released
biomarkers 857 Kalo332023-11-24
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
LitCoin-GeneOrGeneProduct-v0 15.8 KJin-Dong Kim2023-11-29
PubCasesHPO 3.18 MToyofumi Fujiwara2023-11-24Beta
GlycoBiology-GO 0Jin-Dong Kim2023-11-29Testing
GlyCosmos600-GlycoProteins 3.68 KJin-Dong Kim2023-11-27Testing
GlycoBiology-Epitope 3.18 KShujiro Okudashuo502023-11-29Testing
PMID_GLOBAL 2.24 Malo332023-11-24Developing
LitCoin-GeneOrGeneProduct-v3 4.67 KJin-Dong Kim2023-11-24
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-FMA 96.3 KJin-Dong Kim2023-11-29Testing
LitCoin-MeSH-Disease-2 4.08 Kyucca2023-11-29
ENG_RE 224Diana Sousadpavot2023-11-29Developing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
LitCoin-MONDO_bioort2019 3.72 KEisuke Dohi2023-11-29Testing
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing