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NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

1-20 / 317 show all
新着論文レビュー 新着論文レビューに関するアノテーション。0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
FirstAuthor_s 新着論文レビューで疾患名のあるレビューにおけるUniProtIDと薬剤等化合物日化辞ID (Japanese)39.3 KAikoHIRAKI2023-11-29Developing
Erin_test @ Yonsei University0ErinErinHJ_Kim2023-11-29Testing
WikiPainGoldStandard Wiki-pain contains molecular interactions that are relevant to pain.878Daniel Jamiesonnikolamilosevic2023-11-28Developing
tmVarCorpus Wei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156.1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
korean_corpus validation korean90donghwan kim2023-11-29
uniprot-human Uniprot proteins for human21.8 KJin-Dong KimJin-Dong Kim2023-11-29Testing
Nalee trial version 1Nakyolee2023-11-28
Trait_curation150825 Trait curation0Sachiko_ShirasawaSachiko Shirasawa2023-11-29Testing
FA_Top100Plus-GeneProtein Top100＋本来Top100に入るべきだった７レビューの計、107レビュー中101レビュー。 5414, 6076, 6930, 8403, 9643, 18544は、0denotationでドキュメント自体登録していない。 attributesの詳細はconfig参照。 ドキュメントのソースDBが@AikoHIRAKIとなっているものはTypo修正がPubAnnotationの公式FirstAuthorsドキュメントに反映された段階で置き換えます。 10.4 Kyucca2023-11-29Uploading
youworks-test this is test annotation.0Hisato Terada2023-11-29Testing
medical_relation This is about medical inner relation.0ruleryangruleryang2023-11-29Testing
Ab3P-abbreviations This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
CHEMDNER-training-test The training subset of the CHEMDNER corpus29.4 KMartin Krallinger et al.Jin-Dong Kim2023-11-27Testing
jnlpba-st-training The training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999.51.1 KGENIAYue Wang2023-11-26Released
bionlp-st-gro-2013-training The training data set of the BioNLP-ST 2013 GRO task, including 150 MEDLINE abstracts that are annotated with concepts and relations of the Gene Regulation Ontology (GRO; http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html)8.02 KJung-jae KimJung-jae Kim2023-11-29Testing
bionlp-st-pc-2013-training The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013. The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component.7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
bionlp-st-id-2011-training The training dataset from the infectious diseases (ID) task in the BioNLP Shared Task 2011. Entity types: - Genes and gene products: gene, RNA, and protein name mentions. - Two-component systems: mentions of the names of two-component regulatory systems, frequently embedding the names of the two Proteins forming the system.- Chemicals: mentions of chemical compounds such as "NaCL".- Organisms: mentions of organism names or organism specification through specific properties (e.g. "graRS mutant").- Regulons/Operons: mentions of names of specific regulons and operons.5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
bionlp-st-epi-2011-training The training dataset from the Epigenetics and Post-translational Modifications (EPI) task in the BioNLP Shared Task 2011. The core entities of the task are genes and gene products (RNA and proteins), identified in the data simply as "Protein" annotations. 7.59 KGENIAYue Wang2023-11-29Released
bionlp-st-cg-2013-training The training dataset from the cancer genetics task in the BioNLP Shared Task 2013. Composed of anatomical and molecular entities.10.9 KNaCTeMYue Wang2023-11-28Released
NameT# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 317 show all
新着論文レビュー 0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
FirstAuthor_s 39.3 KAikoHIRAKI2023-11-29Developing
Erin_test 0ErinErinHJ_Kim2023-11-29Testing
WikiPainGoldStandard 878Daniel Jamiesonnikolamilosevic2023-11-28Developing
tmVarCorpus 1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
korean_corpus 90donghwan kim2023-11-29
uniprot-human 21.8 KJin-Dong KimJin-Dong Kim2023-11-29Testing
Nalee 1Nakyolee2023-11-28
Trait_curation150825 0Sachiko_ShirasawaSachiko Shirasawa2023-11-29Testing
FA_Top100Plus-GeneProtein 10.4 Kyucca2023-11-29Uploading
youworks-test 0Hisato Terada2023-11-29Testing
medical_relation 0ruleryangruleryang2023-11-29Testing
Ab3P-abbreviations 2.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
CHEMDNER-training-test 29.4 KMartin Krallinger et al.Jin-Dong Kim2023-11-27Testing
jnlpba-st-training 51.1 KGENIAYue Wang2023-11-26Released
bionlp-st-gro-2013-training 8.02 KJung-jae KimJung-jae Kim2023-11-29Testing
bionlp-st-pc-2013-training 7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
bionlp-st-id-2011-training 5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
bionlp-st-epi-2011-training 7.59 KGENIAYue Wang2023-11-29Released
bionlp-st-cg-2013-training 10.9 KNaCTeMYue Wang2023-11-28Released