> top > projects

Projects

NameTDescription# Ann.Author MaintainerUpdated_atStatus

1-20 / 317 show all
Minna_de_Honkoku An annotation project for Minna de Honkoku, a crowdsourced transcription project for historical Japanese documents..204Yuta Hashimotoyhashimoto2023-11-28Developing
Frame annotation ver1 0Younggyun Hahmkaist_nlp2023-11-29Testing
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
MeasurableQuantitativeAnnotation A collection and annotation the measurable quantity information from 3202 pubmed article, which can be used for the task of extracting measurable quantity information. Annotation category: entity, num, unit.2.84 KWenjieNie2023-11-29Testing
HZAU_wangshuguang_Just-for-fun 4wangshuguangwangshuguang2023-11-29Testing
Wangshuguang HZAU_bioinformatics_competition603wangshuguangwangshuguang2023-11-29Released
PennBioIE The PennBioIE corpus (0.9) covers two domains of biomedical knowledge. One is the inhibition of the cytochrome P450 family of enzymes (CYP450 or CYP for short) , and the other domain is the molecular genetics of dance (oncology or onco for short).23.8 KUPenn Biomedical Information Extraction ProjectYue Wang2023-11-26Released
bionlp-st-id-2011-training The training dataset from the infectious diseases (ID) task in the BioNLP Shared Task 2011. Entity types: - Genes and gene products: gene, RNA, and protein name mentions. - Two-component systems: mentions of the names of two-component regulatory systems, frequently embedding the names of the two Proteins forming the system.- Chemicals: mentions of chemical compounds such as "NaCL".- Organisms: mentions of organism names or organism specification through specific properties (e.g. "graRS mutant").- Regulons/Operons: mentions of names of specific regulons and operons.5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
PIR-corpus1 The Protein Information Resource (PIR) is not biased towards any particular biomedical domain, and is expected to provide more diverse protein names in a given sample size. Annotation category: protein, compound-protein, acronym.4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
PIR-corpus2 The protein tag was used to tag proteins, or protein-associated or -related objects, such as domains, pathways, expression of gene. Annotation guideline: http://pir.georgetown.edu/pirwww/about/doc/manietal.pdf5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
BioLarkPubmedHPO 228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.16 KTudor Grozasimon2023-11-29Released
Glycobiology-GlycanName 946Toshihide Shikanaishikanai2023-11-27Testing
infoMED_PsA testing45Timmtimmo2023-11-30Testing
AIMed The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation. Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
Test190926 test0Takeru Nakazatonakazato2023-11-29Testing
tagtog OpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
tagtog-test Test project only for tagtog submissions0tagtogtagtog2023-11-29Testing
Ab3P-abbreviations This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
NameT# Ann.Author MaintainerUpdated_atStatus

1-20 / 317 show all
Minna_de_Honkoku 204Yuta Hashimotoyhashimoto2023-11-28Developing
Frame annotation ver1 0Younggyun Hahmkaist_nlp2023-11-29Testing
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
MeasurableQuantitativeAnnotation 2.84 KWenjieNie2023-11-29Testing
HZAU_wangshuguang_Just-for-fun 4wangshuguangwangshuguang2023-11-29Testing
Wangshuguang 603wangshuguangwangshuguang2023-11-29Released
PennBioIE 23.8 KUPenn Biomedical Information Extraction ProjectYue Wang2023-11-26Released
bionlp-st-id-2011-training 5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
PIR-corpus1 4.44 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-27Released
PIR-corpus2 5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
BioLarkPubmedHPO 7.16 KTudor Grozasimon2023-11-29Released
Glycobiology-GlycanName 946Toshihide Shikanaishikanai2023-11-27Testing
infoMED_PsA 45Timmtimmo2023-11-30Testing
AIMed 4.04 KThe University of Texas at AustinYue Wang2023-11-27Testing
Test190926 0Takeru Nakazatonakazato2023-11-29Testing
tagtog 0tagtogtagtog2015-02-23Developing
tagtog-test 0tagtogtagtog2023-11-29Testing
Ab3P-abbreviations 2.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta