| PubmedHPO | | Human phenotype annotation to PubMed abstracts, based on the HPO ontology | 12.4 M | Tudor Groza | tudor | 2023-11-24 | Beta | |
| LitCovid-PD-MONDO-v1 | | PubDictionaries annotation for disease terms - updated at 2020-04-20
It is based on MONDO Version 2020-04-20.
The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here.
Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. | 13.4 K | | Jin-Dong Kim | 2023-11-29 | Released | |
| LitCoin-PubTator-for-Tuning | | A set of randomly selected PubMed articles with PubTator annotation.
The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows:
'Gene' -> 'GeneOrGeneProduct',
'Disease' -> 'DiseaseOrPhenotypicFeature',
'Chemical' -> 'ChemicalEntity'
'Species' -> 'OrganismTaxon'
'Mutation' -> 'SequenceVariant'
'CellLine' -> 'CellLine' | 14.2 K | | Jin-Dong Kim | 2023-11-29 | | |
| LitCovid-PD-CLO | | | 3.73 M | | Jin-Dong Kim | 2023-11-24 | Developing | |
| DisGeNET | | Disease-Gene association annotation. | 3.12 M | Nuria Queralt | Jin-Dong Kim | 2023-11-24 | Beta | |
| Zierdiyeerkenaili_800_3 | | | 5.85 K | | Zierdiyeerkenaili | 2024-10-07 | | |
| LitCovid-PD-CHEBI | | | 1.43 M | | Jin-Dong Kim | 2023-11-24 | Developing | |
| PubMed_ArguminSci | | Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci). | 777 K | | zebet | 2023-11-24 | Released | |
| chenxin_473849_800_3 | | | 5.69 K | | chenxin0102 | 2024-10-09 | | |
| LitCovid-OGER | | Using OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies | 9.31 K | Fabio Rinaldi | Nico Colic | 2023-11-29 | Released | |
| maxiaofeng52_800_3 | | | 5.93 K | | maxiaofeng52 | 2024-10-07 | | |
| LitCovid-PD-FMA-UBERON | | | 1.3 M | | Jin-Dong Kim | 2023-11-28 | Developing | |
| GlycoBiology-Epitope | | GlycoEpitope-based annotation to GlycoBiology abstracts | 3.18 K | Shujiro Okuda | shuo50 | 2023-11-29 | Testing | |
| NGLY1-deficiency | | A collection of PubMed abstracts that may be related to NGLY1 deficiency. | 60.5 K | | Jin-Dong Kim | 2023-11-29 | Developing | |
| preeclampsia_genes | | | 17.8 K | | Jin-Dong Kim | 2023-11-29 | Developing | |
| sonoma | | _ | 19.3 K | Standigm | | 2023-11-24 | Testing | |
| LitCoin-PubTator_CellLine | | | 388 | | Yasunori Yamamoto | 2023-11-29 | Testing | |
| Preeclampsia-compare | | | 67.2 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| CORD-19-sample-HP | | | 39 | | Jin-Dong Kim | 2023-11-27 | Developing | |
| LitCoin-Disease-MeSH | | MeSH C and F03, plus false negatives that appear in two or more documents in LitCoin-entities | 3.56 K | | yucca | 2023-11-29 | Testing | |
