pubtator-sample | | Sample annotation of PubTator produced by Zhiyong Lu et al. | 28 | Zhiyong Lu | Jin-Dong Kim | 2023-11-27 | Testing | |
CORD-PICO | | Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others. | 69.6 K | Simon Suster | ssuster | 2023-11-27 | Developing | |
GlycoBiology-PACDB | | cGGDB-based annotation to GlycoBiology abstracts | 3.03 K | Toshihide Shikanai | shikanai | 2023-11-27 | Testing | |
CHEMDNER-training-test | | The training subset of the CHEMDNER corpus | 29.4 K | Martin Krallinger et al. | Jin-Dong Kim | 2023-11-27 | Testing | |
CORD-19-sample-HP | | | 39 | | Jin-Dong Kim | 2023-11-27 | Developing | |
CORD-19-sample-sentences | | | 161 | | Jin-Dong Kim | 2023-11-27 | Developing | |
LitCovid-sample-PD-MONDO | | | 1.21 K | | Jin-Dong Kim | 2023-11-27 | Developing | |
bionlp-ost-19-BB-norm-ner-dev | | | 1.33 K | | ldeleger | 2023-11-27 | Developing | |
PT_NER_NEL_CONSENSUS | | | 354 | | dpavot | 2023-11-27 | | |
PMC-KEGG | | Documents from PMC including the word KEGG, with names of software tools and databases marked. | 27 | | yucca | 2023-11-28 | Developing | |
Colil | | Colil (Comments on Literature in Literature) is a search service for citation contexts utilized in the biomedical domain. Colil searches for a cited paper in the Colil database and then returns a list of the citation contexts for it and its relevant papers based on co-citations. | 3.34 K | DBCLS | Toyofumi Fujiwara | 2023-11-28 | Testing | |
GlycoConjugate-collection | | The PubMed entries (titles and abstracts) from the journal of GlycoConjugate | 0 | | Jin-Dong Kim | 2023-11-28 | Developing | |
week10 | | | 57 | | hsp20 | 2023-11-28 | | |
SCAI-Test | | A small corpus for the evaluation of dictionaries containing chemical entities.
Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf
Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html | 1.21 K | CALBC Project | Yue Wang | 2023-11-28 | Released | |
KAIST_NLP_Annotation9 | | | 6.32 K | | kaist_nlp | 2023-11-28 | Developing | |
Parkinson | | | 54 | | Jin-Dong Kim | 2023-11-28 | Testing | |
bionlp-ost-19-BB-kb-ner-test | | | 125 | | ldeleger | 2023-11-28 | Developing | |
LitCovid-PD-HP | | | 922 K | | Jin-Dong Kim | 2023-11-28 | Beta | |
ngly1-sample9 | | | 7 | | Nuria | 2023-11-28 | | |
consensus_PMA_Age_Indications | | | 1.7 K | | laurenc | 2023-11-28 | Beta | |