| TEST-DiseaseOrPhenotypicFeature | | Annotated by Mesh_All_FN | 795 | | Eisuke Dohi | 2023-11-29 | Released | |
| LitCovid-sample-PD-GO-BP-0 | | | 708 | | Jin-Dong Kim | 2023-11-29 | Beta | |
| LitCovid-sample-GO-BP | | | 691 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| AnEM_full-texts | | 250 documents selected randomly from full-text papers
Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation
Together with AnEM_abstracts, it is probably the largest manually annotated corpus on anatomical entities. | 687 | NaCTeM | Yue Wang | 2023-11-29 | Uploading | |
| Trait_curation150831 | | | 620 | Sachiko_Shirasawa | Sachiko Shirasawa | 2023-11-29 | Testing | |
| Goldhamster2_CellLineAnn | | | 618 | | zebet | 2023-11-29 | Developing | |
| ENG_NER_NEL_CONSENSUS | | | 607 | | dpavot | 2023-11-28 | Developing | |
| Wangshuguang | | HZAU_bioinformatics_competition | 603 | wangshuguang | wangshuguang | 2023-11-29 | Released | |
| Kymeka_cho_test | | | 583 | | davidecho | 2024-01-18 | | |
| ENG_NER_NEL_pruas | | | 582 | Pedro Ruas | pruas_18 | 2023-11-30 | Developing | |
| Test20200205 | | | 553 | | BLAH6-Tweets | 2023-11-29 | Testing | |
| PCI_RCT | | | 546 | | Suexuan | 2024-08-24 | Developing | |
| LitCovid-manual | | | 540 | | Jin-Dong Kim | 2023-11-30 | Developing | |
| disease_gene_microbe_small | | Small version (48 abstract that mention both Crohns and S. aureus) for development purposes
Abbreviation: dgm Content: annotated abstracts on Crohn’s disease or on on Staphylococcus aureus (according to the jensenlab.org indexing resources) Entity types: (three for a start, organisms (NCBI Taxonomy taxa), disease (Disease Ontology terms), human genes (ENSEMBL proteins) Aim: Explore indirect associations of diseases to microbial species in this corpus via gene co-mentions | 536 | | evangelos | 2023-11-27 | Testing | |
| wangzhuo19_800_2 | | | 530 | | wangzhuo | 2024-08-27 | | |
| FA_PR25 | | FirstAuthor Protein Ontology 25 entries | 512 | | AikoHIRAKI | 2023-11-29 | Developing | |
| test_lasige | | | 494 | | Jin-Dong Kim | 2023-12-02 | Testing | |
| ENG_NER_NEL | | Annotations in COVID-19 related PubMed abstracts from the following ontologies: Disease Ontology ("do"), Gene Ontology ("go"), Human Phenotype Ontology ("hpo"), ChEBI ontology ("chebi"), MeSH
| 493 | LASIGE-DeST | pruas_18 | 2023-11-26 | Developing | |
| Trait curation | | Project for trait curation in PGDBj | 479 | Sachiko Shirasawa | Sachiko Shirasawa | 2023-11-24 | Testing | |
| glycosmos-test-structure-v1 | | | 471 | | ISSAKU YAMADA | 2023-11-27 | Testing | |
