> top > projects

Projects

NameT Description# Ann.AuthorMaintainerUpdated_atStatus

81-100 / 592 show all
OryzaGP A dataset for Named Entity Recognition for rice gene29.1 KHuy Do and Pierre LarmandeYue Wang2023-11-24Uploading
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2023-11-26Testing
GlyCosmos600-GlycoGenes 87Jin-Dong Kim2023-11-28Testing
ggdb-test 2.4 KJin-Dong Kim2023-11-29Testing
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2023-11-29Developing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
SMAFIRA_Methods Predictions for methods for the SMAFIRA project.0zebet2023-11-28Developing
LitCoin_Mondo_095 3.26 KYasunori Yamamoto2023-11-29Testing
Grays_part2 Osteology w/o 218.63 Kokubo2023-11-29Testing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCovid-PubTator-s 196Jin-Dong Kim2023-11-29
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2023-11-29Testing
silkworm_test test project457yaguchi2023-11-29Testing
CORD-19-sample-HP 39Jin-Dong Kim2023-11-27Developing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2023-11-29Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2023-11-27Testing
funRiceGenes-exact 841Yue Wang2023-11-28Developing
NameT # Ann.AuthorMaintainerUpdated_atStatus

81-100 / 592 show all
OryzaGP 29.1 KHuy Do and Pierre LarmandeYue Wang2023-11-24Uploading
AlvisNLP-Async-Test 0Robert Bossyrbossy2023-11-26Testing
GlyCosmos600-GlycoGenes 87Jin-Dong Kim2023-11-28Testing
ggdb-test 2.4 KJin-Dong Kim2023-11-29Testing
PubMed-2000 0Jin-Dong Kim2023-11-29Developing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
SMAFIRA_Methods 0zebet2023-11-28Developing
LitCoin_Mondo_095 3.26 KYasunori Yamamoto2023-11-29Testing
Grays_part2 8.63 Kokubo2023-11-29Testing
LitCoin-training-merged 14.8 KJin-Dong Kim2023-11-24
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCovid-PubTator-s 196Jin-Dong Kim2023-11-29
EDAM-topics 11.6 KJin-Dong Kim2023-11-29Testing
silkworm_test 457yaguchi2023-11-29Testing
CORD-19-sample-HP 39Jin-Dong Kim2023-11-27Developing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
EDAM-DFO 12.5 KJin-Dong Kim2023-11-29Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2023-11-27Testing
funRiceGenes-exact 841Yue Wang2023-11-28Developing