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NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

321-340 / 590 show all
kaiyin_test 3.33 Kzhoukaiyin2023-11-26
NAKLEE 0Nakyolee2017-07-13
testproj -2tllnd2023-11-30Testing
Test_project :)02023-11-29Testing
sonoma _19.3 KStandigm2023-11-24Testing
FA_108-forWeb 12242,12112, 18829は、0denotationでドキュメント自体登録していない。 @AikoHIRAKIはtypoを修正したレビューフォルダ。50AikoHIRAKI2023-11-29Developing
123123123 123123123150yaoxinzhi2023-11-27Released
FA_Top100-Disease 1/2 FirstAuthor Top100 (201811-201910) for diseases MONDO & HPO2.14 KAikoHIRAKI2023-11-29
BioLarkPubmedHPO 228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.16 KTudor Grozasimon2023-11-29Released
FA_Top100Plus-Disease 2/2 FirstAuthor Top100+7 for diseases MONDO & HPO246AikoHIRAKI2023-11-29Testing
AnEM_abstracts 250 documents selected randomly from citation abstracts Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_full-texts, it is probably the largest manually annotated corpus on anatomical entities.1.91 KNaCTeMYue Wang2023-11-29Released
AnEM_full-texts 250 documents selected randomly from full-text papers Entity types: organism subdivision, anatomical system, organ, multi-tissue structure, tissue, cell, developing anatomical structure, cellular component, organism substance, immaterial anatomical entity and pathological formation Together with AnEM_abstracts, it is probably the largest manually annotated corpus on anatomical entities.687NaCTeMYue Wang2023-11-29Uploading
Virus300 300 abstracts from virology journals annotated with viral proteins and species0http://aclweb.org/anthology/W/W17/W17-2311.pdfhelencook2017-08-07Released
guideline annotations 5 guideline annotations with custom vocab0Tiffany Leung2015-11-07Developing
pubmed-sentences-benchmark A benchmark data for text segmentation into sentences. The source of annotation is the GENIA treebank v1.0. Following is the process taken. began with the GENIA treebank v1.0. sentence annotations were extracted and converted to PubAnnotation JSON. uploaded. 12 abstracts met alignment failure. among the 12 failure cases, 4 had a dot('.') character where there should be colon (':'). They were manually fixed then successfully uploaded: 7903907, 8053950, 8508358, 9415639. among the 12 failed abstracts, 8 were "250 word truncation" cases. They were manually fixed and successfully uploaded. During the fixing, manual annotations were added for the missing pieces of text. 30 abstracts had extra text in the end, indicating copyright statement, e.g., "Copyright 1998 Academic Press." They were annotated as a sentence in GTB. However, the text did not exist anymore in PubMed. Therefore, the extra texts were removed, together with the sentence annotation to them. 18.4 KGENIA projectJin-Dong Kim2023-11-28Released
RELISH-DB Abstracts contained in the data of the RELISH-DB (https://relishdb.ict.griffith.edu.au) made available for download here. Data was downloaded from here: https://figshare.com/projects/RELISH-DB/60095 Related publication: https://academic.oup.com/database/article/doi/10.1093/database/baz085/5608006#20072202302023-11-29Released
PubCasesCollection abstracts in PubCases0Jin-Dong Kim2023-11-29
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2023-11-29Developing
pubmed-2016 abstracts published in 20160Jin-Dong Kim2023-11-28
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2023-11-24Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

321-340 / 590 show all
kaiyin_test 3.33 Kzhoukaiyin2023-11-26
NAKLEE 0Nakyolee2017-07-13
testproj 2tllnd2023-11-30Testing
Test_project 02023-11-29Testing
sonoma 19.3 KStandigm2023-11-24Testing
FA_108-forWeb 50AikoHIRAKI2023-11-29Developing
123123123 150yaoxinzhi2023-11-27Released
FA_Top100-Disease 2.14 KAikoHIRAKI2023-11-29
BioLarkPubmedHPO 7.16 KTudor Grozasimon2023-11-29Released
FA_Top100Plus-Disease 246AikoHIRAKI2023-11-29Testing
AnEM_abstracts 1.91 KNaCTeMYue Wang2023-11-29Released
AnEM_full-texts 687NaCTeMYue Wang2023-11-29Uploading
Virus300 0http://aclweb.org/anthology/W/W17/W17-2311.pdfhelencook2017-08-07Released
guideline annotations 0Tiffany Leung2015-11-07Developing
pubmed-sentences-benchmark 18.4 KGENIA projectJin-Dong Kim2023-11-28Released
RELISH-DB 02023-11-29Released
PubCasesCollection 0Jin-Dong Kim2023-11-29
PubMed-2000 0Jin-Dong Kim2023-11-29Developing
pubmed-2016 0Jin-Dong Kim2023-11-28
PubMed-2017 0Jin-Dong Kim2023-11-24Developing