PMC:116589 / 18529-19659 JSONTXT 6 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T3227 0-6 NN denotes Vector
T3228 7-19 NN denotes construction
T3229 19-176 sentence denotes cDNAs encoding ECFP, EYFP and DsRed were amplified from plasmids pECFP, pEYFP and pDsRed1-N1 (Clontech, Inc.) by PCR using HiFi Taq Polymerase (Invitrogen).
T3230 20-25 NNS denotes cDNAs
T3232 26-34 VBG denotes encoding
T3233 35-39 NN denotes ECFP
T3234 39-41 , denotes ,
T3235 41-45 NN denotes EYFP
T3236 46-49 CC denotes and
T3237 50-55 VBN denotes DsRed
T3238 56-60 VBD denotes were
T3239 61-70 VBN denotes amplified
T3240 71-75 IN denotes from
T3241 76-84 NNS denotes plasmids
T3242 85-90 NN denotes pECFP
T3243 90-92 , denotes ,
T3244 92-97 NN denotes pEYFP
T3245 98-101 CC denotes and
T3246 102-109 NN denotes pDsRed1
T3248 109-110 HYPH denotes -
T3247 110-112 NN denotes N1
T3249 113-114 -LRB- denotes (
T3251 114-122 NNP denotes Clontech
T3252 122-124 , denotes ,
T3250 124-128 NNP denotes Inc.
T3253 128-129 -RRB- denotes )
T3254 130-132 IN denotes by
T3255 133-136 NN denotes PCR
T3231 137-142 VBG denotes using
T3256 143-147 NNP denotes HiFi
T3258 148-151 NNP denotes Taq
T3257 152-162 NN denotes Polymerase
T3259 163-164 -LRB- denotes (
T3260 164-174 NN denotes Invitrogen
T3261 174-175 -RRB- denotes )
T3262 175-176 . denotes .
T3263 176-436 sentence denotes For ECFP and EYFP primers used were GFP-L (5'-TTG AAT TCG CCA CCA TGG TGA GC) and GFP-R (5'-TTG AAT TCT TAC TTG TAC AGC TCG TCC), for dsRed primers were red-L (5'-TTG AAT TCG CCA CCA TGG TGC GCT C) and red-R (5'-TTG AAT TCT TAC GCT ACA GCT ACA GGA ACA GGT G).
T3264 177-180 IN denotes For
T3266 181-185 NN denotes ECFP
T3267 186-189 CC denotes and
T3268 190-194 NN denotes EYFP
T3269 195-202 NNS denotes primers
T3270 203-207 VBN denotes used
T3265 208-212 VBD denotes were
T3272 213-216 NN denotes GFP
T3274 216-217 HYPH denotes -
T3273 217-218 NN denotes L
T3275 219-220 -LRB- denotes (
T3276 220-221 CD denotes 5
T3278 221-222 SYM denotes '
T3279 222-223 HYPH denotes -
T3280 223-226 NN denotes TTG
T3281 227-230 NN denotes AAT
T3282 231-234 NN denotes TCG
T3283 235-238 NN denotes CCA
T3284 239-242 NN denotes CCA
T3285 243-246 NN denotes TGG
T3286 247-250 NN denotes TGA
T3277 251-253 NN denotes GC
T3287 253-254 -RRB- denotes )
T3288 255-258 CC denotes and
T3289 259-262 NN denotes GFP
T3291 262-263 HYPH denotes -
T3290 263-264 NN denotes R
T3292 265-266 -LRB- denotes (
T3294 266-267 NN denotes 5
T3295 267-268 SYM denotes '
T3296 268-269 HYPH denotes -
T3297 269-272 NN denotes TTG
T3298 273-276 NN denotes AAT
T3299 277-280 NN denotes TCT
T3300 281-284 NN denotes TAC
T3301 285-288 NN denotes TTG
T3302 289-292 NN denotes TAC
T3303 293-296 NN denotes AGC
T3304 297-300 NN denotes TCG
T3293 301-304 NN denotes TCC
T3305 304-305 -RRB- denotes )
T3306 305-307 , denotes ,
T3307 307-310 IN denotes for
T3308 311-316 JJ denotes dsRed
T3309 317-324 NNS denotes primers
T3271 325-329 VBD denotes were
T3310 330-333 NN denotes red
T3312 333-334 HYPH denotes -
T3311 334-335 NN denotes L
T3313 336-337 -LRB- denotes (
T3314 337-338 CD denotes 5
T3316 338-339 SYM denotes '
T3317 339-340 HYPH denotes -
T3318 340-343 NN denotes TTG
T3319 344-347 NN denotes AAT
T3320 348-351 NN denotes TCG
T3321 352-355 NN denotes CCA
T3322 356-359 NN denotes CCA
T3323 360-363 NN denotes TGG
T3324 364-367 NN denotes TGC
T3325 368-371 NN denotes GCT
T3315 372-373 NN denotes C
T3326 373-374 -RRB- denotes )
T3327 375-378 CC denotes and
T3328 379-382 NN denotes red
T3330 382-383 HYPH denotes -
T3329 383-384 NN denotes R
T3331 385-386 -LRB- denotes (
T3332 386-387 CD denotes 5
T3334 387-388 SYM denotes '
T3335 388-389 HYPH denotes -
T3336 389-392 NN denotes TTG
T3337 393-396 NN denotes AAT
T3338 397-400 NN denotes TCT
T3339 401-404 NN denotes TAC
T3340 405-408 NN denotes GCT
T3341 409-412 NN denotes ACA
T3342 413-416 NN denotes GCT
T3343 417-420 NN denotes ACA
T3344 421-424 NN denotes GGA
T3345 425-428 NN denotes ACA
T3346 429-432 NN denotes GGT
T3333 433-434 NN denotes G
T3347 434-435 -RRB- denotes )
T3348 435-436 . denotes .
T3349 436-588 sentence denotes All 5' primers contain a Kozak consensus translation initiation site upstream of the ATG for increased translation efficiency in eukaryotic cells [17].
T3350 437-440 DT denotes All
T3352 441-442 CD denotes 5
T3353 442-443 SYM denotes '
T3351 444-451 NNS denotes primers
T3354 452-459 VBP denotes contain
T3355 460-461 DT denotes a
T3357 462-467 NNP denotes Kozak
T3358 468-477 NN denotes consensus
T3359 478-489 NN denotes translation
T3360 490-500 NN denotes initiation
T3356 501-505 NN denotes site
T3361 506-514 JJ denotes upstream
T3362 515-517 IN denotes of
T3363 518-521 DT denotes the
T3364 522-525 NN denotes ATG
T3365 526-529 IN denotes for
T3366 530-539 VBN denotes increased
T3368 540-551 NN denotes translation
T3367 552-562 NN denotes efficiency
T3369 563-565 IN denotes in
T3370 566-576 JJ denotes eukaryotic
T3371 577-582 NNS denotes cells
T3372 583-584 -LRB- denotes [
T3373 584-586 CD denotes 17
T3374 586-587 -RRB- denotes ]
T3375 587-588 . denotes .
T3376 588-815 sentence denotes To construct vectors driving ubiquitous transgene expression in ES cells and mice, the PCR amplified cDNAs were digested with EcoRI and inserted into the EcoRI sites of pCAGGS [18] to generate pCX-ECFP, pCX-EYFP and pCX-DsRed.
T3377 589-591 TO denotes To
T3378 592-601 VB denotes construct
T3380 602-609 NNS denotes vectors
T3381 610-617 VBG denotes driving
T3382 618-628 JJ denotes ubiquitous
T3384 629-638 NN denotes transgene
T3383 639-649 NN denotes expression
T3385 650-652 IN denotes in
T3386 653-655 NN denotes ES
T3387 656-661 NNS denotes cells
T3388 662-665 CC denotes and
T3389 666-670 NNS denotes mice
T3390 670-672 , denotes ,
T3391 672-675 DT denotes the
T3393 676-679 NN denotes PCR
T3394 680-689 VBN denotes amplified
T3392 690-695 NNS denotes cDNAs
T3395 696-700 VBD denotes were
T3379 701-709 VBN denotes digested
T3396 710-714 IN denotes with
T3397 715-720 NN denotes EcoRI
T3398 721-724 CC denotes and
T3399 725-733 VBD denotes inserted
T3400 734-738 IN denotes into
T3401 739-742 DT denotes the
T3403 743-748 NN denotes EcoRI
T3402 749-754 NNS denotes sites
T3404 755-757 IN denotes of
T3405 758-764 NN denotes pCAGGS
T3406 765-766 -LRB- denotes [
T3407 766-768 CD denotes 18
T3408 768-769 -RRB- denotes ]
T3409 770-772 TO denotes to
T3410 773-781 VB denotes generate
T3411 782-785 NN denotes pCX
T3413 785-786 HYPH denotes -
T3412 786-790 NN denotes ECFP
T3414 790-792 , denotes ,
T3415 792-795 NN denotes pCX
T3417 795-796 HYPH denotes -
T3416 796-800 NN denotes EYFP
T3418 801-804 CC denotes and
T3419 805-808 NN denotes pCX
T3421 808-809 HYPH denotes -
T3420 809-814 NN denotes DsRed
T3422 814-815 . denotes .
T3423 815-972 sentence denotes pCAGGS contains the chicken beta-actin promoter and first intron coupled to the CMV immediate early enhancer, and rabbit beta-globin polyadenylation signal.
T3424 816-822 NN denotes pCAGGS
T3425 823-831 VBZ denotes contains
T3426 832-835 DT denotes the
T3428 836-843 NN denotes chicken
T3429 844-848 NN denotes beta
T3431 848-849 HYPH denotes -
T3430 849-854 NN denotes actin
T3427 855-863 NN denotes promoter
T3432 864-867 CC denotes and
T3433 868-873 JJ denotes first
T3434 874-880 NN denotes intron
T3435 881-888 VBN denotes coupled
T3436 889-891 IN denotes to
T3437 892-895 DT denotes the
T3439 896-899 NN denotes CMV
T3440 900-909 JJ denotes immediate
T3441 910-915 JJ denotes early
T3438 916-924 NN denotes enhancer
T3442 924-926 , denotes ,
T3443 926-929 CC denotes and
T3444 930-936 NN denotes rabbit
T3446 937-941 NN denotes beta
T3448 941-942 HYPH denotes -
T3447 942-948 NN denotes globin
T3449 949-964 NN denotes polyadenylation
T3445 965-971 NN denotes signal
T3450 971-972 . denotes .
T3451 972-1130 sentence denotes This promoter/enhancer combination has previously been shown to drive strong and widespread transgene expression in ES cells, embryos and adult mice [18,19].
T3452 973-977 DT denotes This
T3454 978-986 NN denotes promoter
T3456 986-987 HYPH denotes /
T3455 987-995 NN denotes enhancer
T3453 996-1007 NN denotes combination
T3458 1008-1011 VBZ denotes has
T3459 1012-1022 RB denotes previously
T3460 1023-1027 VBN denotes been
T3457 1028-1033 VBN denotes shown
T3461 1034-1036 TO denotes to
T3462 1037-1042 VB denotes drive
T3463 1043-1049 JJ denotes strong
T3465 1050-1053 CC denotes and
T3466 1054-1064 JJ denotes widespread
T3467 1065-1074 NN denotes transgene
T3464 1075-1085 NN denotes expression
T3468 1086-1088 IN denotes in
T3469 1089-1091 NN denotes ES
T3470 1092-1097 NNS denotes cells
T3471 1097-1099 , denotes ,
T3472 1099-1106 NNS denotes embryos
T3473 1107-1110 CC denotes and
T3474 1111-1116 JJ denotes adult
T3475 1117-1121 NNS denotes mice
T3476 1122-1123 -LRB- denotes [
T3478 1123-1125 CD denotes 18
T3479 1125-1126 , denotes ,
T3477 1126-1128 CD denotes 19
T3480 1128-1129 -RRB- denotes ]
T3481 1129-1130 . denotes .
R2188 T3227 T3228 compound Vector,construction
R2189 T3230 T3231 nsubjpass cDNAs,using
R2190 T3232 T3230 acl encoding,cDNAs
R2191 T3233 T3232 dobj ECFP,encoding
R2192 T3234 T3233 punct ", ",ECFP
R2193 T3235 T3233 conj EYFP,ECFP
R2194 T3236 T3235 cc and,EYFP
R2195 T3237 T3235 conj DsRed,EYFP
R2196 T3238 T3231 auxpass were,using
R2197 T3239 T3231 aux amplified,using
R2198 T3240 T3231 prep from,using
R2199 T3241 T3242 compound plasmids,pECFP
R2200 T3242 T3240 pobj pECFP,from
R2201 T3243 T3242 punct ", ",pECFP
R2202 T3244 T3242 conj pEYFP,pECFP
R2203 T3245 T3244 cc and,pEYFP
R2204 T3246 T3247 compound pDsRed1,N1
R2205 T3247 T3244 conj N1,pEYFP
R2206 T3248 T3247 punct -,N1
R2207 T3249 T3250 punct (,Inc.
R2208 T3250 T3242 parataxis Inc.,pECFP
R2209 T3251 T3250 nmod Clontech,Inc.
R2210 T3252 T3250 punct ", ",Inc.
R2211 T3253 T3250 punct ),Inc.
R2212 T3254 T3231 prep by,using
R2213 T3255 T3254 pobj PCR,by
R2214 T3256 T3257 compound HiFi,Polymerase
R2215 T3257 T3231 dobj Polymerase,using
R2216 T3258 T3257 compound Taq,Polymerase
R2217 T3259 T3260 punct (,Invitrogen
R2218 T3260 T3257 parataxis Invitrogen,Polymerase
R2219 T3261 T3260 punct ),Invitrogen
R2220 T3262 T3231 punct .,using
R2221 T3264 T3265 prep For,were
R2222 T3265 T3271 ccomp were,were
R2223 T3266 T3264 pobj ECFP,For
R2224 T3267 T3266 cc and,ECFP
R2225 T3268 T3266 conj EYFP,ECFP
R2226 T3269 T3265 nsubj primers,were
R2227 T3270 T3269 acl used,primers
R2228 T3272 T3273 compound GFP,L
R2229 T3273 T3265 attr L,were
R2230 T3274 T3273 punct -,L
R2231 T3275 T3273 punct (,L
R2232 T3276 T3277 nummod 5,GC
R2233 T3277 T3273 appos GC,L
R2234 T3278 T3276 punct ',5
R2235 T3279 T3277 punct -,GC
R2236 T3280 T3277 compound TTG,GC
R2237 T3281 T3277 compound AAT,GC
R2238 T3282 T3277 compound TCG,GC
R2239 T3283 T3277 compound CCA,GC
R2240 T3284 T3277 compound CCA,GC
R2241 T3285 T3277 compound TGG,GC
R2242 T3286 T3277 compound TGA,GC
R2243 T3287 T3273 punct ),L
R2244 T3288 T3273 cc and,L
R2245 T3289 T3290 compound GFP,R
R2246 T3290 T3273 conj R,L
R2247 T3291 T3290 punct -,R
R2248 T3292 T3293 punct (,TCC
R2249 T3293 T3290 appos TCC,R
R2250 T3294 T3293 nmod 5,TCC
R2251 T3295 T3294 punct ',5
R2252 T3296 T3293 punct -,TCC
R2253 T3297 T3293 compound TTG,TCC
R2254 T3298 T3293 compound AAT,TCC
R2255 T3299 T3293 compound TCT,TCC
R2256 T3300 T3293 compound TAC,TCC
R2257 T3301 T3293 compound TTG,TCC
R2258 T3302 T3293 compound TAC,TCC
R2259 T3303 T3293 compound AGC,TCC
R2260 T3304 T3293 compound TCG,TCC
R2261 T3305 T3271 punct ),were
R2262 T3306 T3271 punct ", ",were
R2263 T3307 T3271 prep for,were
R2264 T3308 T3307 pobj dsRed,for
R2265 T3309 T3271 nsubj primers,were
R2266 T3310 T3311 compound red,L
R2267 T3311 T3271 attr L,were
R2268 T3312 T3311 punct -,L
R2269 T3313 T3311 punct (,L
R2270 T3314 T3315 nummod 5,C
R2271 T3315 T3311 appos C,L
R2272 T3316 T3314 punct ',5
R2273 T3317 T3315 punct -,C
R2274 T3318 T3315 compound TTG,C
R2275 T3319 T3315 compound AAT,C
R2276 T3320 T3315 compound TCG,C
R2277 T3321 T3315 compound CCA,C
R2278 T3322 T3315 compound CCA,C
R2279 T3323 T3315 compound TGG,C
R2280 T3324 T3315 compound TGC,C
R2281 T3325 T3315 compound GCT,C
R2282 T3326 T3311 punct ),L
R2283 T3327 T3311 cc and,L
R2284 T3328 T3329 compound red,R
R2285 T3329 T3311 conj R,L
R2286 T3330 T3329 punct -,R
R2287 T3331 T3329 punct (,R
R2288 T3332 T3333 nummod 5,G
R2289 T3333 T3329 appos G,R
R2290 T3334 T3332 punct ',5
R2291 T3335 T3333 punct -,G
R2292 T3336 T3333 compound TTG,G
R2293 T3337 T3333 compound AAT,G
R2294 T3338 T3333 compound TCT,G
R2295 T3339 T3333 compound TAC,G
R2296 T3340 T3333 compound GCT,G
R2297 T3341 T3333 compound ACA,G
R2298 T3342 T3333 compound GCT,G
R2299 T3343 T3333 compound ACA,G
R2300 T3344 T3333 compound GGA,G
R2301 T3345 T3333 compound ACA,G
R2302 T3346 T3333 compound GGT,G
R2303 T3347 T3271 punct ),were
R2304 T3348 T3271 punct .,were
R2305 T3350 T3351 det All,primers
R2306 T3351 T3354 nsubj primers,contain
R2307 T3352 T3351 nummod 5,primers
R2308 T3353 T3352 punct ',5
R2309 T3355 T3356 det a,site
R2310 T3356 T3354 dobj site,contain
R2311 T3357 T3358 compound Kozak,consensus
R2312 T3358 T3356 compound consensus,site
R2313 T3359 T3360 compound translation,initiation
R2314 T3360 T3356 compound initiation,site
R2315 T3361 T3356 amod upstream,site
R2316 T3362 T3361 prep of,upstream
R2317 T3363 T3364 det the,ATG
R2318 T3364 T3362 pobj ATG,of
R2319 T3365 T3354 prep for,contain
R2320 T3366 T3367 amod increased,efficiency
R2321 T3367 T3365 pobj efficiency,for
R2322 T3368 T3367 compound translation,efficiency
R2323 T3369 T3367 prep in,efficiency
R2324 T3370 T3371 amod eukaryotic,cells
R2325 T3371 T3369 pobj cells,in
R2326 T3372 T3373 punct [,17
R2327 T3373 T3354 parataxis 17,contain
R2328 T3374 T3373 punct ],17
R2329 T3375 T3354 punct .,contain
R2330 T3377 T3378 aux To,construct
R2331 T3378 T3379 advcl construct,digested
R2332 T3380 T3378 dobj vectors,construct
R2333 T3381 T3380 acl driving,vectors
R2334 T3382 T3383 amod ubiquitous,expression
R2335 T3383 T3381 dobj expression,driving
R2336 T3384 T3383 compound transgene,expression
R2337 T3385 T3381 prep in,driving
R2338 T3386 T3387 compound ES,cells
R2339 T3387 T3385 pobj cells,in
R2340 T3388 T3387 cc and,cells
R2341 T3389 T3387 conj mice,cells
R2342 T3390 T3379 punct ", ",digested
R2343 T3391 T3392 det the,cDNAs
R2344 T3392 T3379 nsubjpass cDNAs,digested
R2345 T3393 T3394 npadvmod PCR,amplified
R2346 T3394 T3392 amod amplified,cDNAs
R2347 T3395 T3379 auxpass were,digested
R2348 T3396 T3379 prep with,digested
R2349 T3397 T3396 pobj EcoRI,with
R2350 T3398 T3379 cc and,digested
R2351 T3399 T3379 conj inserted,digested
R2352 T3400 T3399 prep into,inserted
R2353 T3401 T3402 det the,sites
R2354 T3402 T3400 pobj sites,into
R2355 T3403 T3402 compound EcoRI,sites
R2356 T3404 T3402 prep of,sites
R2357 T3405 T3404 pobj pCAGGS,of
R2358 T3406 T3407 punct [,18
R2359 T3407 T3399 parataxis 18,inserted
R2360 T3408 T3407 punct ],18
R2361 T3409 T3410 aux to,generate
R2362 T3410 T3399 advcl generate,inserted
R2363 T3411 T3412 compound pCX,ECFP
R2364 T3412 T3410 dobj ECFP,generate
R2365 T3413 T3412 punct -,ECFP
R2366 T3414 T3412 punct ", ",ECFP
R2367 T3415 T3416 compound pCX,EYFP
R2368 T3416 T3412 conj EYFP,ECFP
R2369 T3417 T3416 punct -,EYFP
R2370 T3418 T3416 cc and,EYFP
R2371 T3419 T3420 compound pCX,DsRed
R2372 T3420 T3416 conj DsRed,EYFP
R2373 T3421 T3420 punct -,DsRed
R2374 T3422 T3379 punct .,digested
R2375 T3424 T3425 nsubj pCAGGS,contains
R2376 T3426 T3427 det the,promoter
R2377 T3427 T3425 dobj promoter,contains
R2378 T3428 T3427 compound chicken,promoter
R2379 T3429 T3430 compound beta,actin
R2380 T3430 T3427 compound actin,promoter
R2381 T3431 T3430 punct -,actin
R2382 T3432 T3427 cc and,promoter
R2383 T3433 T3434 amod first,intron
R2384 T3434 T3427 conj intron,promoter
R2385 T3435 T3427 acl coupled,promoter
R2386 T3436 T3435 prep to,coupled
R2387 T3437 T3438 det the,enhancer
R2388 T3438 T3436 pobj enhancer,to
R2389 T3439 T3438 nmod CMV,enhancer
R2390 T3440 T3438 amod immediate,enhancer
R2391 T3441 T3438 amod early,enhancer
R2392 T3442 T3427 punct ", ",promoter
R2393 T3443 T3427 cc and,promoter
R2394 T3444 T3445 compound rabbit,signal
R2395 T3445 T3427 conj signal,promoter
R2396 T3446 T3447 compound beta,globin
R2397 T3447 T3445 compound globin,signal
R2398 T3448 T3447 punct -,globin
R2399 T3449 T3445 compound polyadenylation,signal
R2400 T3450 T3425 punct .,contains
R2401 T3452 T3453 det This,combination
R2402 T3453 T3457 nsubjpass combination,shown
R2403 T3454 T3455 compound promoter,enhancer
R2404 T3455 T3453 compound enhancer,combination
R2405 T3456 T3455 punct /,enhancer
R2406 T3458 T3457 aux has,shown
R2407 T3459 T3457 advmod previously,shown
R2408 T3460 T3457 auxpass been,shown
R2409 T3461 T3462 aux to,drive
R2410 T3462 T3457 xcomp drive,shown
R2411 T3463 T3464 amod strong,expression
R2412 T3464 T3462 dobj expression,drive
R2413 T3465 T3463 cc and,strong
R2414 T3466 T3463 conj widespread,strong
R2415 T3467 T3464 compound transgene,expression
R2416 T3468 T3462 prep in,drive
R2417 T3469 T3470 compound ES,cells
R2418 T3470 T3468 pobj cells,in
R2419 T3471 T3470 punct ", ",cells
R2420 T3472 T3470 conj embryos,cells
R2421 T3473 T3472 cc and,embryos
R2422 T3474 T3475 amod adult,mice
R2423 T3475 T3472 conj mice,embryos
R2424 T3476 T3477 punct [,19
R2425 T3477 T3457 parataxis 19,shown
R2426 T3478 T3477 nummod 18,19
R2427 T3479 T3477 punct ",",19
R2428 T3480 T3477 punct ],19
R2429 T3481 T3457 punct .,shown