bionlp-st-ge-2016-spacy-parsed Home  

PMC:2889865 / 31744-32647 JSONTXT 16 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T14532 0-7 VB denotes Reverse
T14533 8-21 NN denotes transcription
T14534 22-34 JJ denotes quantitative
T14535 35-38 NNP denotes PCR
T14536 39-40 -LRB- denotes (
T14537 40-47 NNP denotes RT-qPCR
T14538 47-48 -RRB- denotes )
T14539 49-56 NN denotes RT-qPCR
T14540 57-60 VBD denotes was
T14541 61-65 VBN denotes used
T14542 66-68 TO denotes to
T14543 69-78 VB denotes determine
T14544 79-83 NN denotes gene
T14545 84-94 NN denotes expression
T14546 95-101 NNS denotes levels
T14547 102-104 IN denotes of
T14548 105-109 JJ denotes il-6
T14549 110-113 CC denotes and
T14550 114-119 CD denotes cxcl8
T14551 120-122 IN denotes in
T14552 123-131 NN denotes response
T14553 132-134 TO denotes to
T14554 135-138 NNP denotes PMA
T14555 139-148 VBG denotes following
T14556 149-159 NN denotes inhibition
T14557 160-162 IN denotes of
T14558 163-168 NNP denotes NF-κB
T14559 168-169 , denotes ,
T14560 170-173 NNP denotes JNK
T14561 174-177 CC denotes and
T14562 178-181 NNP denotes PKC
T14563 181-182 . denotes .
T14564 183-186 DT denotes The
T14565 187-196 JJ denotes following
T14566 197-203 NN denotes primer
T14567 204-213 NNS denotes sequences
T14568 214-218 VBD denotes were
T14569 219-223 VBN denotes used
T14570 223-224 , denotes ,
T14571 225-229 JJ denotes il-6
T14572 229-230 : denotes :
T14573 231-238 RB denotes forward
T14574 238-239 : denotes -
T14575 240-264 NNP denotes TGTGAAAGCAGCAAAGAGGCACTG
T14576 264-265 , denotes ,
T14577 266-273 NN denotes reverse
T14578 273-274 : denotes -
T14579 275-299 NNP denotes ACAGCTCTGGCTTGTTCCTCACTA
T14580 299-300 : denotes ;
T14581 301-306 CD denotes cxcl8
T14582 306-307 : denotes :
T14583 308-315 RB denotes forward
T14584 315-316 : denotes -
T14585 317-341 NNP denotes ACCACACTGCGCCAACACAGAAAT
T14586 341-342 , denotes ,
T14587 343-350 NN denotes reverse
T14588 350-351 : denotes -
T14589 352-376 NNP denotes AAACTTCTCCACAACCCTCTGCAC
T14590 376-377 . denotes .
T14591 378-391 VBG denotes Thermocycling
T14592 392-402 NNS denotes conditions
T14593 403-406 IN denotes for
T14594 407-411 NNP denotes CYBR
T14595 412-417 NNP denotes Green
T14596 418-419 -LRB- denotes (
T14597 419-425 NNP denotes Quanta
T14598 425-426 , denotes ,
T14599 427-430 NNP denotes USA
T14600 430-431 -RRB- denotes )
T14601 432-441 VBD denotes consisted
T14602 442-444 IN denotes of
T14603 445-446 DT denotes a
T14604 447-459 NN denotes denaturation
T14605 460-464 NN denotes step
T14606 465-468 IN denotes for
T14607 469-471 CD denotes 10
T14608 472-475 NN denotes min
T14609 476-478 IN denotes at
T14610 479-481 CD denotes 95
T14611 482-483 CD denotes °
T14612 483-484 NNP denotes C
T14613 485-493 VBN denotes followed
T14614 494-496 IN denotes by
T14615 497-499 CD denotes 60
T14616 500-506 NNS denotes cycles
T14617 507-509 IN denotes of
T14618 510-512 CD denotes 95
T14619 512-513 CD denotes °
T14620 513-514 NNP denotes C
T14621 515-518 IN denotes for
T14622 519-521 NNS denotes 1s
T14623 522-525 CC denotes and
T14624 526-528 CD denotes 60
T14625 528-529 NN denotes °
T14626 529-530 NNP denotes C
T14627 531-534 IN denotes for
T14628 535-538 CD denotes 30s
T14629 538-539 . denotes .
T14630 540-544 NNP denotes Gene
T14631 545-555 NN denotes expression
T14632 556-559 VBD denotes was
T14633 560-568 VBN denotes analysed
T14634 569-574 VBG denotes using
T14635 575-585 NNP denotes Stratagene
T14636 586-587 -LRB- denotes (
T14637 587-594 NNP denotes Mx3000p
T14638 594-595 NNP denotes ™
T14639 595-596 -RRB- denotes )
T14640 597-598 -LRB- denotes (
T14641 598-600 NNP denotes AH
T14642 601-612 NNS denotes diagnostics
T14643 612-613 -RRB- denotes )
T14644 613-614 . denotes .
T14645 615-618 DT denotes The
T14646 619-627 VBN denotes obtained
T14647 628-630 NNP denotes Ct
T14648 631-637 NNS denotes values
T14649 638-642 VBD denotes were
T14650 643-653 VBN denotes normalized
T14651 654-661 IN denotes against
T14652 662-665 NNP denotes 18S
T14653 665-666 . denotes .
T14654 667-676 RB denotes Initially
T14655 676-677 , denotes ,
T14656 678-681 DT denotes all
T14657 682-690 VBN denotes measured
T14658 691-694 NNP denotes 18S
T14659 695-697 NNP denotes Ct
T14660 698-704 NNS denotes values
T14661 705-709 VBD denotes were
T14662 710-714 VBN denotes used
T14663 715-717 TO denotes to
T14664 718-727 VB denotes calculate
T14665 728-729 DT denotes a
T14666 730-734 JJ denotes mean
T14667 735-737 JJ denotes Ct
T14668 738-743 NN denotes value
T14669 744-748 WDT denotes that
T14670 749-752 VBD denotes was
T14671 753-757 VBN denotes used
T14672 758-760 TO denotes to
T14673 761-770 VB denotes determine
T14674 771-774 DT denotes the
T14675 775-778 NNP denotes ΔCt
T14676 779-785 NNS denotes values
T14677 786-789 IN denotes for
T14678 790-794 DT denotes each
T14679 795-801 NN denotes sample
T14680 801-802 . denotes .
T14681 803-807 NNP denotes Gene
T14682 808-818 NN denotes expression
T14683 819-827 NNS denotes patterns
T14684 828-831 IN denotes for
T14685 832-836 JJ denotes il-6
T14686 837-840 CC denotes and
T14687 841-846 CD denotes cxcl8
T14688 847-851 VBD denotes were
T14689 852-856 RB denotes then
T14690 857-867 VBN denotes normalized
T14691 868-872 IN denotes with
T14692 873-879 NN denotes regard
T14693 880-882 TO denotes to
T14694 883-886 DT denotes the
T14695 887-894 NNS denotes samples
T14696 895-898 NNP denotes 18S
T14697 899-902 NNP denotes ΔCt
T14698 902-903 . denotes .
R11763 T14532 T14541 advcl Reverse,used
R11764 T14533 T14532 dobj transcription,Reverse
R11765 T14534 T14535 amod quantitative,PCR
R11766 T14535 T14539 nmod PCR,RT-qPCR
R11767 T14536 T14535 punct (,PCR
R11768 T14537 T14535 appos RT-qPCR,PCR
R11769 T14538 T14535 punct ),PCR
R11770 T14539 T14541 nsubjpass RT-qPCR,used
R11771 T14540 T14541 auxpass was,used
R11772 T14541 T14541 ROOT used,used
R11773 T14542 T14543 aux to,determine
R11774 T14543 T14541 xcomp determine,used
R11775 T14544 T14545 compound gene,expression
R11776 T14545 T14546 compound expression,levels
R11777 T14546 T14543 dobj levels,determine
R11778 T14547 T14546 prep of,levels
R11779 T14548 T14547 pobj il-6,of
R11780 T14549 T14548 cc and,il-6
R11781 T14550 T14548 conj cxcl8,il-6
R11782 T14551 T14543 prep in,determine
R11783 T14552 T14551 pobj response,in
R11784 T14553 T14552 prep to,response
R11785 T14554 T14555 neg PMA,following
R11786 T14555 T14541 prep following,used
R11787 T14556 T14555 dobj inhibition,following
R11788 T14557 T14556 prep of,inhibition
R11789 T14558 T14557 pobj NF-κB,of
R11790 T14559 T14558 punct ",",NF-κB
R11791 T14560 T14558 conj JNK,NF-κB
R11792 T14561 T14560 cc and,JNK
R11793 T14562 T14560 conj PKC,JNK
R11794 T14563 T14541 punct .,used
R11795 T14564 T14567 det The,sequences
R11796 T14565 T14567 amod following,sequences
R11797 T14566 T14567 compound primer,sequences
R11798 T14567 T14569 nsubjpass sequences,used
R11799 T14568 T14569 auxpass were,used
R11800 T14569 T14569 ROOT used,used
R11801 T14570 T14579 punct ",",ACAGCTCTGGCTTGTTCCTCACTA
R11802 T14571 T14579 amod il-6,ACAGCTCTGGCTTGTTCCTCACTA
R11803 T14572 T14579 punct :,ACAGCTCTGGCTTGTTCCTCACTA
R11804 T14573 T14579 advmod forward,ACAGCTCTGGCTTGTTCCTCACTA
R11805 T14574 T14575 punct -,TGTGAAAGCAGCAAAGAGGCACTG
R11806 T14575 T14579 nmod TGTGAAAGCAGCAAAGAGGCACTG,ACAGCTCTGGCTTGTTCCTCACTA
R11807 T14576 T14577 punct ",",reverse
R11808 T14577 T14579 nmod reverse,ACAGCTCTGGCTTGTTCCTCACTA
R11809 T14578 T14579 punct -,ACAGCTCTGGCTTGTTCCTCACTA
R11810 T14579 T14569 dobj ACAGCTCTGGCTTGTTCCTCACTA,used
R11811 T14580 T14579 punct ;,ACAGCTCTGGCTTGTTCCTCACTA
R11812 T14581 T14585 nummod cxcl8,ACCACACTGCGCCAACACAGAAAT
R11813 T14582 T14585 punct :,ACCACACTGCGCCAACACAGAAAT
R11814 T14583 T14585 meta forward,ACCACACTGCGCCAACACAGAAAT
R11815 T14584 T14585 punct -,ACCACACTGCGCCAACACAGAAAT
R11816 T14585 T14579 appos ACCACACTGCGCCAACACAGAAAT,ACAGCTCTGGCTTGTTCCTCACTA
R11817 T14586 T14587 punct ",",reverse
R11818 T14587 T14589 nmod reverse,AAACTTCTCCACAACCCTCTGCAC
R11819 T14588 T14589 punct -,AAACTTCTCCACAACCCTCTGCAC
R11820 T14589 T14585 dobj AAACTTCTCCACAACCCTCTGCAC,ACCACACTGCGCCAACACAGAAAT
R11821 T14590 T14569 punct .,used
R11822 T14591 T14601 csubj Thermocycling,consisted
R11823 T14592 T14591 dobj conditions,Thermocycling
R11824 T14593 T14601 mark for,consisted
R11825 T14594 T14595 compound CYBR,Green
R11826 T14595 T14593 pobj Green,for
R11827 T14596 T14597 punct (,Quanta
R11828 T14597 T14595 appos Quanta,Green
R11829 T14598 T14597 punct ",",Quanta
R11830 T14599 T14597 appos USA,Quanta
R11831 T14600 T14597 punct ),Quanta
R11832 T14601 T14601 ROOT consisted,consisted
R11833 T14602 T14601 prep of,consisted
R11834 T14603 T14605 det a,step
R11835 T14604 T14605 compound denaturation,step
R11836 T14605 T14602 pobj step,of
R11837 T14606 T14605 prep for,step
R11838 T14607 T14608 nummod 10,min
R11839 T14608 T14606 pobj min,for
R11840 T14609 T14601 prep at,consisted
R11841 T14610 T14609 pobj 95,at
R11842 T14611 T14612 nummod °,C
R11843 T14612 T14601 dobj C,consisted
R11844 T14613 T14601 advcl followed,consisted
R11845 T14614 T14613 agent by,followed
R11846 T14615 T14616 nummod 60,cycles
R11847 T14616 T14614 pobj cycles,by
R11848 T14617 T14616 prep of,cycles
R11849 T14618 T14620 nummod 95,C
R11850 T14619 T14620 nummod °,C
R11851 T14620 T14617 pobj C,of
R11852 T14621 T14613 prep for,followed
R11853 T14622 T14621 pobj 1s,for
R11854 T14623 T14622 cc and,1s
R11855 T14624 T14625 nummod 60,°
R11856 T14625 T14626 compound °,C
R11857 T14626 T14622 conj C,1s
R11858 T14627 T14613 prep for,followed
R11859 T14628 T14627 pobj 30s,for
R11860 T14629 T14601 punct .,consisted
R11861 T14630 T14631 compound Gene,expression
R11862 T14631 T14633 nsubjpass expression,analysed
R11863 T14632 T14633 auxpass was,analysed
R11864 T14633 T14633 ROOT analysed,analysed
R11865 T14634 T14633 advcl using,analysed
R11866 T14635 T14634 dobj Stratagene,using
R11867 T14636 T14638 punct (,™
R11868 T14637 T14638 compound Mx3000p,™
R11869 T14638 T14635 appos ™,Stratagene
R11870 T14639 T14638 punct ),™
R11871 T14640 T14642 punct (,diagnostics
R11872 T14641 T14642 compound AH,diagnostics
R11873 T14642 T14638 appos diagnostics,™
R11874 T14643 T14638 punct ),™
R11875 T14644 T14633 punct .,analysed
R11876 T14645 T14648 det The,values
R11877 T14646 T14648 amod obtained,values
R11878 T14647 T14648 amod Ct,values
R11879 T14648 T14649 nsubj values,were
R11880 T14649 T14649 ROOT were,were
R11881 T14650 T14649 acomp normalized,were
R11882 T14651 T14650 prep against,normalized
R11883 T14652 T14651 pobj 18S,against
R11884 T14653 T14649 punct .,were
R11885 T14654 T14662 advmod Initially,used
R11886 T14655 T14662 punct ",",used
R11887 T14656 T14660 det all,values
R11888 T14657 T14660 amod measured,values
R11889 T14658 T14660 compound 18S,values
R11890 T14659 T14660 compound Ct,values
R11891 T14660 T14662 nsubjpass values,used
R11892 T14661 T14662 auxpass were,used
R11893 T14662 T14662 ROOT used,used
R11894 T14663 T14664 aux to,calculate
R11895 T14664 T14662 xcomp calculate,used
R11896 T14665 T14668 det a,value
R11897 T14666 T14668 amod mean,value
R11898 T14667 T14668 amod Ct,value
R11899 T14668 T14664 dobj value,calculate
R11900 T14669 T14671 nsubjpass that,used
R11901 T14670 T14671 auxpass was,used
R11902 T14671 T14668 relcl used,value
R11903 T14672 T14673 aux to,determine
R11904 T14673 T14671 xcomp determine,used
R11905 T14674 T14676 det the,values
R11906 T14675 T14676 compound ΔCt,values
R11907 T14676 T14673 dobj values,determine
R11908 T14677 T14676 prep for,values
R11909 T14678 T14679 det each,sample
R11910 T14679 T14677 pobj sample,for
R11911 T14680 T14662 punct .,used
R11912 T14681 T14683 compound Gene,patterns
R11913 T14682 T14683 compound expression,patterns
R11914 T14683 T14690 nsubjpass patterns,normalized
R11915 T14684 T14683 prep for,patterns
R11916 T14685 T14684 pobj il-6,for
R11917 T14686 T14685 cc and,il-6
R11918 T14687 T14685 nummod cxcl8,il-6
R11919 T14688 T14690 auxpass were,normalized
R11920 T14689 T14690 advmod then,normalized
R11921 T14690 T14690 ROOT normalized,normalized
R11922 T14691 T14690 prep with,normalized
R11923 T14692 T14691 pobj regard,with
R11924 T14693 T14692 prep to,regard
R11925 T14694 T14695 det the,samples
R11926 T14695 T14693 pobj samples,to
R11927 T14696 T14697 compound 18S,ΔCt
R11928 T14697 T14695 appos ΔCt,samples
R11929 T14698 T14690 punct .,normalized