bionlp-ost-19-BB-rel-train  

BB-rel@ldeleger:BB-rel-10738994 JSONTXT

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Id Subject Object Predicate Lexical cue
T1 0-188 Title denotes Genotyping by restriction endonuclease analysis compared to phenotyping by antibiogram for typing methicillin-resistant Staphylococcus aureus strains colonizing patients in a nursing home.
T7 98-119 Phenotype denotes methicillin-resistant
T8 120-141 Microorganism denotes Staphylococcus aureus
E2 120-141 Lives_In denotes Staphylococcus aureus
E1 120-141 Exhibits denotes Staphylococcus aureus
T9 161-169 Habitat denotes patients
T10 175-187 Habitat denotes nursing home
T2 189-545 Paragraph denotes To assist in defining patterns of methicillin-resistant Staphylococcus aureus (MRSA) colonization in a skilled nursing facility (SNF), we compared genotyping by field-inversion gel electrophoresis (FIGE) restriction endonuclease digestion analysis (REA) with phenotyping by antibiogram for defining strain relatedness among MRSA isolates from SNF patients.
T11 223-244 Phenotype denotes methicillin-resistant
T12 245-266 Microorganism denotes Staphylococcus aureus
E4 245-266 Lives_In denotes Staphylococcus aureus
E3 245-266 Exhibits denotes Staphylococcus aureus
T13 268-272 Microorganism denotes MRSA
T14 268-272 Phenotype denotes MRSA
T15 292-316 Habitat denotes skilled nursing facility
T16 318-321 Habitat denotes SNF
T17 513-517 Microorganism denotes MRSA
T18 513-517 Phenotype denotes MRSA
E6 513-517 Lives_In denotes MRSA
E5 513-517 Exhibits denotes MRSA
T20 532-535 Habitat denotes SNF
T19 532-544 Habitat denotes SNF patients
T3 546-632 Paragraph denotes Prospective screening culture surveillance for MRSA among patients in a community SNF.
T21 593-597 Microorganism denotes MRSA
T22 593-597 Phenotype denotes MRSA
E8 593-597 Lives_In denotes MRSA
E7 593-597 Exhibits denotes MRSA
T23 604-612 Habitat denotes patients
T24 618-631 Habitat denotes community SNF
T26 633-638 Habitat denotes Nares
T25-0 633-638 _FRAGMENT denotes Nares
T4 633-877 Paragraph denotes Nares and stool swab cultures were obtained from newly admitted patients and from all patients quarterly. MRSA were isolated by oxacillin screening agar. Antibiograms were determined by the disk-diffusion method, and genotyping was by FIGE REA.
T28 643-648 Habitat denotes stool
T27 643-662 Habitat denotes stool swab cultures
T25-1 649-662 Habitat denotes swab cultures
T29 697-705 Habitat denotes patients
T30 719-727 Habitat denotes patients
T31 739-743 Microorganism denotes MRSA
T32 739-743 Phenotype denotes MRSA
E10 739-743 Lives_In denotes MRSA
E11 739-743 Lives_In denotes MRSA
E12 739-743 Lives_In denotes MRSA
E13 739-743 Lives_In denotes MRSA
E14 739-743 Lives_In denotes MRSA
E9 739-743 Exhibits denotes MRSA
T33 761-785 Habitat denotes oxacillin screening agar
T5 878-1159 Paragraph denotes It was shown that, among isolates with the same genotypes, many had different antibiograms; among isolates with the same antibiograms, many had different genotypes; and the discriminatory indices for isolates of MRSA by FIGE REA and by antibiogram were 0.56 and 0.78, respectively.
T34 1090-1094 Microorganism denotes MRSA
T35 1090-1094 Phenotype denotes MRSA
E15 1090-1094 Exhibits denotes MRSA
T6 1160-1632 Paragraph denotes Our study demonstrated that, in patients from one SNF, genotyping by FIGE REA identified two prevalent REA DNA types, but with variability of antibiogram patterns within each DNA type; the antibiogram also identified prevalent patterns with variability of REA DNA type within each antibiogram pattern. The discriminatory index of antibiograms alone, or of genotypes alone as determined by FIGE REA, was poor for strains of MRSA isolated from the SNF patients in our study.
T36 1192-1213 Habitat denotes patients from one SNF
T37 1210-1213 Habitat denotes SNF
T38 1583-1587 Microorganism denotes MRSA
T39 1583-1587 Phenotype denotes MRSA
E17 1583-1587 Lives_In denotes MRSA
E16 1583-1587 Exhibits denotes MRSA
T40 1606-1609 Habitat denotes SNF
T41 1606-1618 Habitat denotes SNF patients
C-T25-0 T25-1 T25-0 _lexicallyChainedTo swab cultures,Nares
R1 E2 T8 Microorganism Staphylococcus aureus,Staphylococcus aureus
R10 E6 T19 Location MRSA,SNF patients
R11 E5 T17 Microorganism MRSA,MRSA
R12 E5 T18 Property MRSA,MRSA
R13 E8 T21 Microorganism MRSA,MRSA
R14 E8 T23 Location MRSA,patients
R15 E7 T21 Microorganism MRSA,MRSA
R16 E7 T22 Property MRSA,MRSA
R17 E10 T31 Microorganism MRSA,MRSA
R18 E10 T25-0 Location MRSA,Nares
R19 E11 T31 Microorganism MRSA,MRSA
R2 E2 T9 Location Staphylococcus aureus,patients
R20 E11 T28 Location MRSA,stool
R21 E12 T31 Microorganism MRSA,MRSA
R22 E12 T33 Location MRSA,oxacillin screening agar
R23 E13 T31 Microorganism MRSA,MRSA
R24 E13 T26 Location MRSA,Nares
R25 E14 T31 Microorganism MRSA,MRSA
R26 E14 T27 Location MRSA,stool swab cultures
R27 E9 T31 Microorganism MRSA,MRSA
R28 E9 T32 Property MRSA,MRSA
R29 E15 T34 Microorganism MRSA,MRSA
R3 E1 T8 Microorganism Staphylococcus aureus,Staphylococcus aureus
R30 E15 T35 Property MRSA,MRSA
R31 E17 T38 Microorganism MRSA,MRSA
R32 E17 T41 Location MRSA,SNF patients
R33 E16 T38 Microorganism MRSA,MRSA
R34 E16 T39 Property MRSA,MRSA
R4 E1 T7 Property Staphylococcus aureus,methicillin-resistant
R5 E4 T12 Microorganism Staphylococcus aureus,Staphylococcus aureus
R6 E4 T15 Location Staphylococcus aureus,skilled nursing facility
R7 E3 T12 Microorganism Staphylococcus aureus,Staphylococcus aureus
R8 E3 T11 Property Staphylococcus aureus,methicillin-resistant
R9 E6 T17 Microorganism MRSA,MRSA