PubMed:9136989 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/9136989","sourcedb":"PubMed","sourceid":"9136989","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/9136989","text":"Inhibitor (IK) of IFN-gamma induced HLA class II antigens expression also inhibits HLA class II constitutive expression in the human Raji B cell line.\nThe expression of major histocompatibility complex (MHC) class II antigens is constitutive in professional antigen presenting cells (APCs) but can also be induced by interferon-gamma (IFN-gamma) on the majority of the non professional APCs (e.g. fibroblasts). We have recently characterised a new factor called IK which is an efficient inhibitor of IFN-gamma induction of MHC class II antigens expression. Here, we demonstrate a novel role for IK in MHC class II expression since over-expression of this protein by stable transfection into human B cells led to a total disappearance of constitutive MHC class II mRNA expression. The class II transactivator (CIITA) is necessary for both constitutive and IFN-gamma induced MHC class II expressions. Examination of CIITA mRNA in IK stably transfected clones revealed a marked reduction of CIITA mRNA transcription. Taken together these results demonstrate that the IK protein plays a key role in the constitutive expression of MHC class II antigens and that inhibition induced by IK is upstream of CIITA in this regulatory pathway.","tracks":[{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":18,"end":27},"obj":"protein"},{"id":"T2","span":{"begin":36,"end":57},"obj":"protein"},{"id":"T3","span":{"begin":83,"end":95},"obj":"protein"},{"id":"T4","span":{"begin":127,"end":149},"obj":"cell_line"},{"id":"T5","span":{"begin":169,"end":225},"obj":"protein"},{"id":"T6","span":{"begin":245,"end":282},"obj":"cell_type"},{"id":"T7","span":{"begin":284,"end":288},"obj":"cell_type"},{"id":"T8","span":{"begin":317,"end":333},"obj":"protein"},{"id":"T9","span":{"begin":335,"end":344},"obj":"protein"},{"id":"T10","span":{"begin":373,"end":390},"obj":"cell_type"},{"id":"T11","span":{"begin":397,"end":408},"obj":"cell_type"},{"id":"T12","span":{"begin":462,"end":464},"obj":"protein"},{"id":"T13","span":{"begin":500,"end":509},"obj":"protein"},{"id":"T14","span":{"begin":523,"end":544},"obj":"protein"},{"id":"T15","span":{"begin":595,"end":597},"obj":"protein"},{"id":"T16","span":{"begin":601,"end":613},"obj":"protein"},{"id":"T17","span":{"begin":750,"end":767},"obj":"RNA"},{"id":"T18","span":{"begin":784,"end":807},"obj":"DNA"},{"id":"T19","span":{"begin":809,"end":814},"obj":"DNA"},{"id":"T20","span":{"begin":855,"end":864},"obj":"protein"},{"id":"T21","span":{"begin":873,"end":885},"obj":"protein"},{"id":"T22","span":{"begin":914,"end":924},"obj":"RNA"},{"id":"T23","span":{"begin":928,"end":930},"obj":"protein"},{"id":"T24","span":{"begin":988,"end":998},"obj":"RNA"},{"id":"T25","span":{"begin":1064,"end":1074},"obj":"protein"},{"id":"T26","span":{"begin":1126,"end":1147},"obj":"protein"},{"id":"T27","span":{"begin":1179,"end":1181},"obj":"protein"},{"id":"T28","span":{"begin":1197,"end":1202},"obj":"DNA"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"},{"subj":"T24","pred":"source","obj":"jnlpba-st-training"},{"subj":"T25","pred":"source","obj":"jnlpba-st-training"},{"subj":"T26","pred":"source","obj":"jnlpba-st-training"},{"subj":"T27","pred":"source","obj":"jnlpba-st-training"},{"subj":"T28","pred":"source","obj":"jnlpba-st-training"}]},{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":68},"obj":"NP"},{"id":"C3","span":{"begin":169,"end":225},"obj":"NP"},{"id":"C2","span":{"begin":151,"end":225},"obj":"NP"},{"id":"C5","span":{"begin":442,"end":464},"obj":"NP"},{"id":"C6","span":{"begin":465,"end":470},"obj":"NP"},{"id":"C7","span":{"begin":523,"end":555},"obj":"NP"},{"id":"C4","span":{"begin":442,"end":555},"obj":"NP"},{"id":"C8","span":{"begin":595,"end":597},"obj":"NP"},{"id":"C9","span":{"begin":601,"end":624},"obj":"NP"},{"id":"C10","span":{"begin":650,"end":662},"obj":"NP"},{"id":"C11","span":{"begin":737,"end":778},"obj":"NP"},{"id":"C12","span":{"begin":780,"end":815},"obj":"NP"},{"id":"C13","span":{"begin":1060,"end":1074},"obj":"NP"},{"id":"C15","span":{"begin":1126,"end":1147},"obj":"NP"},{"id":"C14","span":{"begin":1095,"end":1147},"obj":"NP"},{"id":"C16","span":{"begin":1179,"end":1181},"obj":"NP"},{"id":"C17","span":{"begin":1197,"end":1202},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C6","obj":"C5"},{"id":"R2","pred":"coref-ident","subj":"C7","obj":"C2"},{"id":"R3","pred":"coref-ident","subj":"C4","obj":"C1"},{"id":"R4","pred":"coref-ident","subj":"C8","obj":"C4"},{"id":"R5","pred":"coref-ident","subj":"C9","obj":"C7"},{"id":"R6","pred":"coref-ident","subj":"C10","obj":"C8"},{"id":"R7","pred":"coref-ident","subj":"C13","obj":"C10"},{"id":"R8","pred":"coref-ident","subj":"C15","obj":"C3"},{"id":"R9","pred":"coref-ident","subj":"C14","obj":"C11"},{"id":"R10","pred":"coref-ident","subj":"C16","obj":"C13"},{"id":"R11","pred":"coref-ident","subj":"C17","obj":"C12"}],"attributes":[{"subj":"C1","pred":"source","obj":"genia-medco-coref"},{"subj":"C3","pred":"source","obj":"genia-medco-coref"},{"subj":"C2","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C6","pred":"source","obj":"genia-medco-coref"},{"subj":"C7","pred":"source","obj":"genia-medco-coref"},{"subj":"C4","pred":"source","obj":"genia-medco-coref"},{"subj":"C8","pred":"source","obj":"genia-medco-coref"},{"subj":"C9","pred":"source","obj":"genia-medco-coref"},{"subj":"C10","pred":"source","obj":"genia-medco-coref"},{"subj":"C11","pred":"source","obj":"genia-medco-coref"},{"subj":"C12","pred":"source","obj":"genia-medco-coref"},{"subj":"C13","pred":"source","obj":"genia-medco-coref"},{"subj":"C15","pred":"source","obj":"genia-medco-coref"},{"subj":"C14","pred":"source","obj":"genia-medco-coref"},{"subj":"C16","pred":"source","obj":"genia-medco-coref"},{"subj":"C17","pred":"source","obj":"genia-medco-coref"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":150},"obj":"Sentence"},{"id":"S2","span":{"begin":151,"end":410},"obj":"Sentence"},{"id":"S3","span":{"begin":411,"end":556},"obj":"Sentence"},{"id":"S4","span":{"begin":557,"end":779},"obj":"Sentence"},{"id":"S5","span":{"begin":780,"end":898},"obj":"Sentence"},{"id":"S6","span":{"begin":899,"end":1013},"obj":"Sentence"},{"id":"S7","span":{"begin":1014,"end":1230},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S7","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":17},"obj":"other_organic_compound"},{"id":"T2","span":{"begin":18,"end":27},"obj":"protein_molecule"},{"id":"T3","span":{"begin":36,"end":57},"obj":"protein_family_or_group"},{"id":"T4","span":{"begin":83,"end":95},"obj":"protein_family_or_group"},{"id":"T5","span":{"begin":127,"end":149},"obj":"cell_line"},{"id":"T6","span":{"begin":169,"end":225},"obj":"protein_family_or_group"},{"id":"T7","span":{"begin":245,"end":282},"obj":"cell_type"},{"id":"T8","span":{"begin":284,"end":288},"obj":"cell_type"},{"id":"T9","span":{"begin":317,"end":333},"obj":"protein_molecule"},{"id":"T10","span":{"begin":335,"end":344},"obj":"protein_molecule"},{"id":"T11","span":{"begin":373,"end":385},"obj":"cell_type"},{"id":"T12","span":{"begin":386,"end":390},"obj":"cell_type"},{"id":"T13","span":{"begin":397,"end":408},"obj":"cell_type"},{"id":"T14","span":{"begin":462,"end":464},"obj":"protein_molecule"},{"id":"T15","span":{"begin":500,"end":509},"obj":"protein_molecule"},{"id":"T16","span":{"begin":523,"end":544},"obj":"protein_family_or_group"},{"id":"T17","span":{"begin":595,"end":597},"obj":"protein_molecule"},{"id":"T18","span":{"begin":601,"end":613},"obj":"protein_family_or_group"},{"id":"T19","span":{"begin":737,"end":749},"obj":"other_name"},{"id":"T20","span":{"begin":750,"end":767},"obj":"RNA_domain_or_region"},{"id":"T21","span":{"begin":784,"end":807},"obj":"DNA_domain_or_region"},{"id":"T22","span":{"begin":809,"end":814},"obj":"DNA_domain_or_region"},{"id":"T23","span":{"begin":855,"end":864},"obj":"protein_molecule"},{"id":"T24","span":{"begin":873,"end":885},"obj":"protein_family_or_group"},{"id":"T25","span":{"begin":914,"end":919},"obj":"DNA_domain_or_region"},{"id":"T26","span":{"begin":928,"end":930},"obj":"protein_molecule"},{"id":"T27","span":{"begin":988,"end":993},"obj":"DNA_domain_or_region"},{"id":"T28","span":{"begin":1064,"end":1066},"obj":"protein_molecule"},{"id":"T29","span":{"begin":1126,"end":1147},"obj":"protein_family_or_group"},{"id":"T30","span":{"begin":1179,"end":1181},"obj":"protein_molecule"},{"id":"T31","span":{"begin":1197,"end":1202},"obj":"DNA_domain_or_region"},{"id":"T32","span":{"begin":1211,"end":1229},"obj":"other_name"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"jnlpba-st-training","color":"#9b93ec","default":true},{"id":"genia-medco-coref","color":"#a4ec93"},{"id":"pubmed-sentences-benchmark","color":"#ec93be"},{"id":"GENIAcorpus","color":"#93d8ec"}]}]}}