PubMed:32763970 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/32763970","sourcedb":"PubMed","sourceid":"32763970","source_url":"https://www.ncbi.nlm.nih.gov/pubmed/32763970","text":"Impaired NLRP3 inflammasome activation/pyroptosis leads to robust inflammatory cell death via caspase-8/RIPK3 during coronavirus infection.\nCoronaviruses have caused several zoonotic infections in the past two decades, leading to significant morbidity and mortality globally. Balanced regulation of cell death and inflammatory immune responses is essential to promote protection against coronavirus infection; however, the underlying mechanisms that control these processes remain to be resolved. Here we demonstrate that infection with the murine coronavirus mouse hepatitis virus (MHV) activated the NLRP3 inflammasome and inflammatory cell death in the form of PANoptosis. Deleting NLRP3 inflammasome components or the downstream cell death executioner gasdermin D (GSDMD) led to an initial reduction in cell death followed by a robust increase in the incidence of caspase-8- and receptor-interacting serine/threonine-protein kinase 3 (RIPK3)-mediated inflammatory cell death after coronavirus infection. Additionally, loss of GSDMD promoted robust NLRP3 inflammasome activation. Moreover, the amounts of some cytokines released during coronavirus infection were significantly altered due to the absence of GSDMD. Altogether our findings show that inflammatory cell death is induced by coronavirus infection and that impaired NLRP3 inflammasome function or pyroptosis can lead to negative consequences for the host. These findings may have important implications for studies of coronavirus-induced disease.","tracks":[{"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":9,"end":14},"obj":"PR:000011271"},{"id":"T2","span":{"begin":28,"end":38},"obj":"GO:0042116"},{"id":"T3","span":{"begin":39,"end":49},"obj":"GO:0070269"},{"id":"T4","span":{"begin":66,"end":83},"obj":"CL:0009002"},{"id":"T5","span":{"begin":79,"end":89},"obj":"GO:0008219"},{"id":"T6","span":{"begin":94,"end":103},"obj":"PR:000002317"},{"id":"T7","span":{"begin":104,"end":109},"obj":"PR:000014024"},{"id":"T8","span":{"begin":117,"end":128},"obj":"NCBITaxon:11118"},{"id":"T9","span":{"begin":140,"end":153},"obj":"NCBITaxon:11118"},{"id":"T10","span":{"begin":285,"end":309},"obj":"GO:0010941"},{"id":"T11","span":{"begin":327,"end":333},"obj":"UBERON:0002405"},{"id":"T12","span":{"begin":327,"end":343},"obj":"GO:0006955"},{"id":"T13","span":{"begin":387,"end":398},"obj":"NCBITaxon:11118"},{"id":"T14","span":{"begin":450,"end":457},"obj":"GO:0065007"},{"id":"T15","span":{"begin":541,"end":547},"obj":"NCBITaxon:39107"},{"id":"T16","span":{"begin":548,"end":559},"obj":"NCBITaxon:11118"},{"id":"T17","span":{"begin":560,"end":565},"obj":"NCBITaxon:10088"},{"id":"T18","span":{"begin":566,"end":575},"obj":"NCBITaxon:5690"},{"id":"T19","span":{"begin":576,"end":581},"obj":"NCBITaxon:10376"},{"id":"T20","span":{"begin":583,"end":586},"obj":"NCBITaxon:11757"},{"id":"T21","span":{"begin":602,"end":607},"obj":"PR:000011271"},{"id":"T22","span":{"begin":625,"end":642},"obj":"CL:0009002"},{"id":"T23","span":{"begin":638,"end":648},"obj":"GO:0008219"},{"id":"T24","span":{"begin":685,"end":690},"obj":"PR:000011271"},{"id":"T25","span":{"begin":733,"end":743},"obj":"GO:0008219"},{"id":"T26","span":{"begin":756,"end":767},"obj":"PR:000029521"},{"id":"T27","span":{"begin":807,"end":817},"obj":"GO:0008219"},{"id":"T28","span":{"begin":868,"end":877},"obj":"PR:000002317"},{"id":"T29","span":{"begin":883,"end":937},"obj":"PR:000014024"},{"id":"T30","span":{"begin":939,"end":944},"obj":"PR:000014024"},{"id":"T31","span":{"begin":955,"end":972},"obj":"CL:0009002"},{"id":"T32","span":{"begin":968,"end":978},"obj":"GO:0008219"},{"id":"T33","span":{"begin":985,"end":996},"obj":"NCBITaxon:11118"},{"id":"T34","span":{"begin":1052,"end":1057},"obj":"PR:000011271"},{"id":"T35","span":{"begin":1071,"end":1081},"obj":"GO:0002437"},{"id":"T36","span":{"begin":1139,"end":1150},"obj":"NCBITaxon:11118"},{"id":"T37","span":{"begin":1251,"end":1268},"obj":"CL:0009002"},{"id":"T38","span":{"begin":1264,"end":1274},"obj":"GO:0008219"},{"id":"T39","span":{"begin":1289,"end":1300},"obj":"NCBITaxon:11118"},{"id":"T40","span":{"begin":1329,"end":1334},"obj":"PR:000011271"},{"id":"T41","span":{"begin":1360,"end":1370},"obj":"GO:0070269"},{"id":"T42","span":{"begin":1481,"end":1492},"obj":"NCBITaxon:11118"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T2","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T3","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T4","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T5","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T6","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T7","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T8","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T9","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T10","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T11","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T12","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T13","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T14","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T15","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T16","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T17","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T18","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T19","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T20","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T21","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T22","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T23","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T24","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T25","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T26","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T27","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T28","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T29","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T30","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T31","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T32","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T33","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T34","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T35","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T36","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T37","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T38","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T39","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T40","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T41","pred":"source","obj":"LitCovid-OGER-BB"},{"subj":"T42","pred":"source","obj":"LitCovid-OGER-BB"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":79,"end":83},"obj":"Body_part"},{"id":"T2","span":{"begin":299,"end":303},"obj":"Body_part"},{"id":"T3","span":{"begin":638,"end":642},"obj":"Body_part"},{"id":"T4","span":{"begin":733,"end":737},"obj":"Body_part"},{"id":"T5","span":{"begin":807,"end":811},"obj":"Body_part"},{"id":"T6","span":{"begin":904,"end":910},"obj":"Body_part"},{"id":"T7","span":{"begin":911,"end":920},"obj":"Body_part"},{"id":"T8","span":{"begin":921,"end":928},"obj":"Body_part"},{"id":"T9","span":{"begin":968,"end":972},"obj":"Body_part"},{"id":"T10","span":{"begin":1113,"end":1122},"obj":"Body_part"},{"id":"T11","span":{"begin":1264,"end":1268},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma82764"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma82765"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T1","span":{"begin":129,"end":138},"obj":"Disease"},{"id":"T2","span":{"begin":174,"end":193},"obj":"Disease"},{"id":"T3","span":{"begin":399,"end":408},"obj":"Disease"},{"id":"T4","span":{"begin":522,"end":531},"obj":"Disease"},{"id":"T5","span":{"begin":566,"end":575},"obj":"Disease"},{"id":"T6","span":{"begin":997,"end":1006},"obj":"Disease"},{"id":"T7","span":{"begin":1151,"end":1160},"obj":"Disease"},{"id":"T8","span":{"begin":1301,"end":1310},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0025481"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0002251"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":28,"end":38},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T2","span":{"begin":79,"end":83},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T3","span":{"begin":299,"end":303},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T4","span":{"begin":560,"end":565},"obj":"http://purl.obolibrary.org/obo/CLO_0007836"},{"id":"T5","span":{"begin":576,"end":581},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T6","span":{"begin":588,"end":597},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T7","span":{"begin":638,"end":642},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T8","span":{"begin":733,"end":737},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T9","span":{"begin":807,"end":811},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T10","span":{"begin":830,"end":831},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T11","span":{"begin":968,"end":972},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T12","span":{"begin":1071,"end":1081},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T13","span":{"begin":1264,"end":1268},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":904,"end":910},"obj":"Chemical"},{"id":"T2","span":{"begin":911,"end":920},"obj":"Chemical"},{"id":"T3","span":{"begin":921,"end":928},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_17822"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_26986"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":566,"end":575},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":9,"end":38},"obj":"http://purl.obolibrary.org/obo/GO_0044546"},{"id":"T2","span":{"begin":39,"end":49},"obj":"http://purl.obolibrary.org/obo/GO_0070269"},{"id":"T3","span":{"begin":79,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T4","span":{"begin":285,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0010941"},{"id":"T5","span":{"begin":285,"end":295},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T6","span":{"begin":299,"end":309},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T7","span":{"begin":327,"end":343},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T8","span":{"begin":638,"end":648},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T9","span":{"begin":733,"end":743},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T10","span":{"begin":807,"end":817},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T11","span":{"begin":968,"end":978},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T12","span":{"begin":1052,"end":1081},"obj":"http://purl.obolibrary.org/obo/GO_0044546"},{"id":"T13","span":{"begin":1264,"end":1274},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T14","span":{"begin":1360,"end":1370},"obj":"http://purl.obolibrary.org/obo/GO_0070269"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"Inflammaging","denotations":[{"id":"T1","span":{"begin":0,"end":139},"obj":"Sentence"},{"id":"T2","span":{"begin":140,"end":275},"obj":"Sentence"},{"id":"T3","span":{"begin":276,"end":496},"obj":"Sentence"},{"id":"T4","span":{"begin":497,"end":675},"obj":"Sentence"},{"id":"T5","span":{"begin":676,"end":1007},"obj":"Sentence"},{"id":"T6","span":{"begin":1008,"end":1082},"obj":"Sentence"},{"id":"T7","span":{"begin":1083,"end":1216},"obj":"Sentence"},{"id":"T8","span":{"begin":1217,"end":1418},"obj":"Sentence"},{"id":"T9","span":{"begin":1419,"end":1509},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":139},"obj":"Sentence"},{"id":"T2","span":{"begin":140,"end":275},"obj":"Sentence"},{"id":"T3","span":{"begin":276,"end":496},"obj":"Sentence"},{"id":"T4","span":{"begin":497,"end":675},"obj":"Sentence"},{"id":"T5","span":{"begin":676,"end":1007},"obj":"Sentence"},{"id":"T6","span":{"begin":1008,"end":1082},"obj":"Sentence"},{"id":"T7","span":{"begin":1083,"end":1216},"obj":"Sentence"},{"id":"T8","span":{"begin":1217,"end":1418},"obj":"Sentence"},{"id":"T9","span":{"begin":1419,"end":1509},"obj":"Sentence"}],"attributes":[{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"},{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1","span":{"begin":0,"end":139},"obj":"Sentence"},{"id":"T2","span":{"begin":140,"end":275},"obj":"Sentence"},{"id":"T3","span":{"begin":276,"end":496},"obj":"Sentence"},{"id":"T4","span":{"begin":497,"end":675},"obj":"Sentence"},{"id":"T5","span":{"begin":676,"end":1007},"obj":"Sentence"},{"id":"T6","span":{"begin":1008,"end":1082},"obj":"Sentence"},{"id":"T7","span":{"begin":1083,"end":1216},"obj":"Sentence"},{"id":"T8","span":{"begin":1217,"end":1418},"obj":"Sentence"},{"id":"T9","span":{"begin":1419,"end":1509},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-sentences"},{"subj":"T2","pred":"source","obj":"LitCovid-sentences"},{"subj":"T3","pred":"source","obj":"LitCovid-sentences"},{"subj":"T4","pred":"source","obj":"LitCovid-sentences"},{"subj":"T5","pred":"source","obj":"LitCovid-sentences"},{"subj":"T6","pred":"source","obj":"LitCovid-sentences"},{"subj":"T7","pred":"source","obj":"LitCovid-sentences"},{"subj":"T8","pred":"source","obj":"LitCovid-sentences"},{"subj":"T9","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2","span":{"begin":9,"end":14},"obj":"Gene"},{"id":"3","span":{"begin":117,"end":138},"obj":"Disease"},{"id":"21","span":{"begin":140,"end":153},"obj":"Species"},{"id":"22","span":{"begin":174,"end":193},"obj":"Disease"},{"id":"23","span":{"begin":256,"end":265},"obj":"Disease"},{"id":"24","span":{"begin":387,"end":408},"obj":"Disease"},{"id":"25","span":{"begin":522,"end":531},"obj":"Disease"},{"id":"26","span":{"begin":541,"end":559},"obj":"Species"},{"id":"27","span":{"begin":560,"end":581},"obj":"Species"},{"id":"28","span":{"begin":583,"end":586},"obj":"Species"},{"id":"29","span":{"begin":602,"end":607},"obj":"Gene"},{"id":"30","span":{"begin":685,"end":690},"obj":"Gene"},{"id":"31","span":{"begin":904,"end":910},"obj":"Chemical"},{"id":"32","span":{"begin":985,"end":1006},"obj":"Disease"},{"id":"33","span":{"begin":1052,"end":1057},"obj":"Gene"},{"id":"34","span":{"begin":1139,"end":1160},"obj":"Disease"},{"id":"35","span":{"begin":1289,"end":1310},"obj":"Disease"},{"id":"36","span":{"begin":1329,"end":1334},"obj":"Gene"},{"id":"37","span":{"begin":1481,"end":1508},"obj":"Disease"}],"attributes":[{"id":"A2","pred":"tao:has_database_id","subj":"2","obj":"Gene:114548"},{"id":"A3","pred":"tao:has_database_id","subj":"3","obj":"MESH:D018352"},{"id":"A21","pred":"tao:has_database_id","subj":"21","obj":"Tax:11118"},{"id":"A22","pred":"tao:has_database_id","subj":"22","obj":"MESH:D015047"},{"id":"A23","pred":"tao:has_database_id","subj":"23","obj":"MESH:D003643"},{"id":"A24","pred":"tao:has_database_id","subj":"24","obj":"MESH:D018352"},{"id":"A25","pred":"tao:has_database_id","subj":"25","obj":"MESH:D007239"},{"id":"A26","pred":"tao:has_database_id","subj":"26","obj":"Tax:694005"},{"id":"A27","pred":"tao:has_database_id","subj":"27","obj":"Tax:11138"},{"id":"A28","pred":"tao:has_database_id","subj":"28","obj":"Tax:11138"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"Gene:114548"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"Gene:114548"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"MESH:D012694"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"MESH:D018352"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"Gene:114548"},{"id":"A34","pred":"tao:has_database_id","subj":"34","obj":"MESH:D018352"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"MESH:D018352"},{"id":"A36","pred":"tao:has_database_id","subj":"36","obj":"Gene:114548"},{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"MESH:D018352"},{"subj":"2","pred":"source","obj":"LitCovid-PubTator"},{"subj":"3","pred":"source","obj":"LitCovid-PubTator"},{"subj":"21","pred":"source","obj":"LitCovid-PubTator"},{"subj":"22","pred":"source","obj":"LitCovid-PubTator"},{"subj":"23","pred":"source","obj":"LitCovid-PubTator"},{"subj":"24","pred":"source","obj":"LitCovid-PubTator"},{"subj":"25","pred":"source","obj":"LitCovid-PubTator"},{"subj":"26","pred":"source","obj":"LitCovid-PubTator"},{"subj":"27","pred":"source","obj":"LitCovid-PubTator"},{"subj":"28","pred":"source","obj":"LitCovid-PubTator"},{"subj":"29","pred":"source","obj":"LitCovid-PubTator"},{"subj":"30","pred":"source","obj":"LitCovid-PubTator"},{"subj":"31","pred":"source","obj":"LitCovid-PubTator"},{"subj":"32","pred":"source","obj":"LitCovid-PubTator"},{"subj":"33","pred":"source","obj":"LitCovid-PubTator"},{"subj":"34","pred":"source","obj":"LitCovid-PubTator"},{"subj":"35","pred":"source","obj":"LitCovid-PubTator"},{"subj":"36","pred":"source","obj":"LitCovid-PubTator"},{"subj":"37","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid_AGAC_only","denotations":[{"id":"p86822s0","span":{"begin":676,"end":684},"obj":"Var"},{"id":"p86822s1","span":{"begin":685,"end":690},"obj":"Gene"},{"id":"p86822s21","span":{"begin":807,"end":817},"obj":"CPA"},{"id":"p86822s47","span":{"begin":938,"end":945},"obj":"Gene"},{"id":"p86823s2","span":{"begin":1022,"end":1026},"obj":"Var"}],"attributes":[{"subj":"p86822s0","pred":"source","obj":"LitCovid_AGAC_only"},{"subj":"p86822s1","pred":"source","obj":"LitCovid_AGAC_only"},{"subj":"p86822s21","pred":"source","obj":"LitCovid_AGAC_only"},{"subj":"p86822s47","pred":"source","obj":"LitCovid_AGAC_only"},{"subj":"p86823s2","pred":"source","obj":"LitCovid_AGAC_only"}]},{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":139},"obj":"Sentence"},{"id":"T2","span":{"begin":140,"end":275},"obj":"Sentence"},{"id":"T3","span":{"begin":276,"end":496},"obj":"Sentence"},{"id":"T4","span":{"begin":497,"end":675},"obj":"Sentence"},{"id":"T5","span":{"begin":676,"end":1007},"obj":"Sentence"},{"id":"T6","span":{"begin":1008,"end":1082},"obj":"Sentence"},{"id":"T7","span":{"begin":1083,"end":1216},"obj":"Sentence"},{"id":"T8","span":{"begin":1217,"end":1418},"obj":"Sentence"},{"id":"T9","span":{"begin":1419,"end":1509},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":566,"end":575},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0012115"},{"subj":"T1","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":129,"end":138},"obj":"Disease"},{"id":"T2","span":{"begin":174,"end":193},"obj":"Disease"},{"id":"T3","span":{"begin":399,"end":408},"obj":"Disease"},{"id":"T4","span":{"begin":522,"end":531},"obj":"Disease"},{"id":"T5","span":{"begin":566,"end":575},"obj":"Disease"},{"id":"T6","span":{"begin":997,"end":1006},"obj":"Disease"},{"id":"T7","span":{"begin":1151,"end":1160},"obj":"Disease"},{"id":"T8","span":{"begin":1301,"end":1310},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0025481"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0002251"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"},{"subj":"T3","pred":"source","obj":"mondo_disease"},{"subj":"T4","pred":"source","obj":"mondo_disease"},{"subj":"T5","pred":"source","obj":"mondo_disease"},{"subj":"T6","pred":"source","obj":"mondo_disease"},{"subj":"T7","pred":"source","obj":"mondo_disease"},{"subj":"T8","pred":"source","obj":"mondo_disease"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":541,"end":559},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":560,"end":565},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":566,"end":581},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"694005"},{"id":"A2","pred":"db_id","subj":"T2","obj":"10088"},{"id":"A3","pred":"db_id","subj":"T2","obj":"10090"},{"id":"A4","pred":"db_id","subj":"T4","obj":"10407"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T4","pred":"source","obj":"NCBITAXON"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":66,"end":83},"obj":"Cell"},{"id":"T2","span":{"begin":625,"end":642},"obj":"Cell"},{"id":"T3","span":{"begin":955,"end":972},"obj":"Cell"},{"id":"T4","span":{"begin":1251,"end":1268},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0009002"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0009002"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0009002"},{"id":"A4","pred":"cl_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL:0009002"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T2","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"},{"subj":"T4","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-OGER-BB","color":"#93b0ec","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#caec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93e4"},{"id":"LitCovid-PD-CLO","color":"#93ecda"},{"id":"LitCovid-PD-CHEBI","color":"#ecc093"},{"id":"LitCovid-PD-HP","color":"#a693ec"},{"id":"LitCovid-PD-GO-BP","color":"#9aec93"},{"id":"Inflammaging","color":"#ec93b4"},{"id":"LitCovid-sentences","color":"#93ceec"},{"id":"LitCovid-PubTator","color":"#e8ec93"},{"id":"LitCovid_AGAC_only","color":"#d693ec"},{"id":"sentences","color":"#93ecbc"},{"id":"HP-phenotype","color":"#eca293"},{"id":"mondo_disease","color":"#939dec"},{"id":"NCBITAXON","color":"#b7ec93"},{"id":"CL-cell","color":"#ec93d2"}]}]}}