PubMed:28068934 / 415-779
Annnotations
PubTator4TogoVar
| Id | Subject | Object | Predicate | Lexical cue | proteinmutation |
|---|---|---|---|---|---|
| 28068934_0 | 76-82 | ProteinMutation | denotes | H1047R | rs121913279 |
| 28068934_1 | 88-94 | ProteinMutation | denotes | H1047L | rs121913279 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 0-364 | Sentence | denotes | We examined five hotspot mutations in the PIK3CA gene (E542K, E545K, E546K, H1047R, and H1047L) in formalin-fixed and paraffin-embedded tissue sections of paired endoscopic biopsy and surgically resected specimens from 181 patients undergoing curative resection for ESCC between 2000 and 2011 using a Luminex technology-based multiplex gene mutation detection kit. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 12043 | 42-48 | GeneOrGeneProduct | denotes | PIK3CA | NCBIGene:5290 |
| 12044 | 55-60 | SequenceVariant | denotes | E542K | DBSNP:rs121913273 |
| 12045 | 62-67 | SequenceVariant | denotes | E545K | DBSNP:rs104886003 |
| 12046 | 69-74 | SequenceVariant | denotes | E546K | p|SUB|E|546|K |
| 12047 | 76-82 | SequenceVariant | denotes | H1047R | DBSNP:rs121913279 |
| 12048 | 88-94 | SequenceVariant | denotes | H1047L | DBSNP:rs121913279 |
| 12049 | 99-107 | ChemicalEntity | denotes | formalin | MESH:D005557 |
| 12050 | 118-126 | ChemicalEntity | denotes | paraffin | MESH:D010232 |
| 12051 | 223-231 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 12052 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | MESH:D000077277 |
LitCoin-SeqVar
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 55-60 | SequenceVariant | denotes | E542K |
| T2 | 62-67 | SequenceVariant | denotes | E545K |
| T3 | 69-74 | SequenceVariant | denotes | E546K |
| T4 | 76-82 | SequenceVariant | denotes | H1047R |
| T5 | 88-94 | SequenceVariant | denotes | H1047L |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 25-34 | GeneOrGeneProduct | denotes | mutations |
| T12 | 42-48 | GeneOrGeneProduct | denotes | PIK3CA |
| T13 | 155-161 | GeneOrGeneProduct | denotes | paired |
| T14 | 266-270 | GeneOrGeneProduct | denotes | ESCC |
| T15 | 320-325 | GeneOrGeneProduct | denotes | based |
| T16 | 341-349 | GeneOrGeneProduct | denotes | mutation |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 42-48 | GeneOrGeneProduct | denotes | PIK3CA |
| T7 | 155-161 | GeneOrGeneProduct | denotes | paired |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T4 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | D000077277 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 42-48 | GeneOrGeneProduct | denotes | PIK3CA |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T4 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | 0005580 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T4 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | D000077277 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 223-231 | OrganismTaxon | denotes | patients |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T4 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | D000077277 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 99-107 | ChemicalEntity | denotes | formalin | D005557 |
| T2 | 118-126 | ChemicalEntity | denotes | paraffin | D010232|ChemicalEntity |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T2 | 118-126 | ChemicalEntity | denotes | paraffin | ChemicalEntity|D010232 | |
| T1 | 99-107 | ChemicalEntity | denotes | formalin | D005557 | |
| T4 | 42-48 | GeneOrGeneProduct | denotes | PIK3CA | ||
| T76861 | 266-270 | DiseaseOrPhenotypicFeature | denotes | ESCC | D000077277 | |
| T58424 | 223-231 | OrganismTaxon | denotes | patients | ||
| T74027 | 88-94 | SequenceVariant | denotes | H1047L | ||
| T42809 | 76-82 | SequenceVariant | denotes | H1047R | ||
| T3154 | 69-74 | SequenceVariant | denotes | E546K | ||
| T72399 | 62-67 | SequenceVariant | denotes | E545K | ||
| T23816 | 55-60 | SequenceVariant | denotes | E542K |