PubMed:22711886 / 1748-2102
Annnotations
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T9 | 148-152 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 0-354 | Sentence | denotes | Altogether, our results suggest that TRAF2 deficiency cooperates with BCL-2 in promoting chronic lymphocytic leukemia/small lymphocytic lymphoma in mice, possibly by specifically enforcing marginal zone B cell accumulation, increasing X-linked inhibitor of apoptosis expression, and rendering B cells independent of B cell activating factor for survival. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 9013 | 37-42 | GeneOrGeneProduct | denotes | TRAF2 | NCBIGene:22030 |
| 9014 | 70-75 | GeneOrGeneProduct | denotes | BCL-2 | NCBIGene:596 |
| 9015 | 89-117 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia | MESH:D015451 |
| 9016 | 118-144 | DiseaseOrPhenotypicFeature | denotes | small lymphocytic lymphoma | MESH:D015451 |
| 9017 | 148-152 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 9018 | 235-266 | GeneOrGeneProduct | denotes | X-linked inhibitor of apoptosis | NCBIGene:11798 |
| 9019 | 316-340 | GeneOrGeneProduct | denotes | B cell activating factor | NCBIGene:24099 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T6 | 89-144 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma | 0003864 |
| T7 | 109-117 | DiseaseOrPhenotypicFeature | denotes | leukemia | 0005059 |
| T8 | 136-144 | DiseaseOrPhenotypicFeature | denotes | lymphoma | 0005062 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 37-42 | GeneOrGeneProduct | denotes | TRAF2 |
| T71 | 70-75 | GeneOrGeneProduct | denotes | BCL-2 |
| T72 | 97-108 | GeneOrGeneProduct | denotes | lymphocytic |
| T73 | 118-123 | GeneOrGeneProduct | denotes | small |
| T74 | 124-135 | GeneOrGeneProduct | denotes | lymphocytic |
| T75 | 148-152 | GeneOrGeneProduct | denotes | mice |
| T76 | 189-197 | GeneOrGeneProduct | denotes | marginal |
| T77 | 205-209 | GeneOrGeneProduct | denotes | cell |
| T78 | 235-266 | GeneOrGeneProduct | denotes | X-linked inhibitor of apoptosis |
| T79 | 295-300 | GeneOrGeneProduct | denotes | cells |
| T80 | 316-340 | GeneOrGeneProduct | denotes | B cell activating factor |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 37-42 | GeneOrGeneProduct | denotes | TRAF2 |
| T41 | 70-75 | GeneOrGeneProduct | denotes | BCL-2 |
| T42 | 118-123 | GeneOrGeneProduct | denotes | small |
| T43 | 205-209 | GeneOrGeneProduct | denotes | cell |
| T44 | 235-266 | GeneOrGeneProduct | denotes | X-linked inhibitor of apoptosis |
| T45 | 316-340 | GeneOrGeneProduct | denotes | B cell activating factor |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T5 | 89-117 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia | D015451 |
| T6 | 118-144 | DiseaseOrPhenotypicFeature | denotes | small lymphocytic lymphoma | D015451 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T27 | 37-42 | GeneOrGeneProduct | denotes | TRAF2 |
| T28 | 70-75 | GeneOrGeneProduct | denotes | BCL-2 |
| T29 | 235-266 | GeneOrGeneProduct | denotes | X-linked inhibitor of apoptosis |
| T30 | 316-340 | GeneOrGeneProduct | denotes | B cell activating factor |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T5 | 89-144 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma | 0003864 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T5 | 89-117 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia | D015451 |
| T6 | 118-144 | DiseaseOrPhenotypicFeature | denotes | small lymphocytic lymphoma | D015451 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T5 | 89-117 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia | D015451 |
| T6 | 118-144 | DiseaseOrPhenotypicFeature | denotes | small lymphocytic lymphoma | D015451 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 148-152 | OrganismTaxon | denotes | mice |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T30 | 316-340 | GeneOrGeneProduct | denotes | B cell activating factor | |
| T29 | 235-266 | GeneOrGeneProduct | denotes | X-linked inhibitor of apoptosis | |
| T28 | 70-75 | GeneOrGeneProduct | denotes | BCL-2 | |
| T27 | 37-42 | GeneOrGeneProduct | denotes | TRAF2 | |
| T12342 | 118-144 | DiseaseOrPhenotypicFeature | denotes | small lymphocytic lymphoma | D015451 |
| T79355 | 89-117 | DiseaseOrPhenotypicFeature | denotes | chronic lymphocytic leukemia | D015451 |
| T96215 | 148-152 | OrganismTaxon | denotes | mice |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 37-42 | gene:10010 | denotes | TRAF2 |
| T1 | 89-144 | disease:C1302547 | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma |
| T2 | 37-42 | gene:7186 | denotes | TRAF2 |
| T3 | 89-144 | disease:C1302547 | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma |
| T4 | 70-75 | gene:596 | denotes | BCL-2 |
| T5 | 89-144 | disease:C1302547 | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma |
| T6 | 316-340 | gene:10673 | denotes | B cell activating factor |
| T7 | 89-144 | disease:C1302547 | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma |
| R1 | T0 | T1 | associated_with | TRAF2,chronic lymphocytic leukemia/small lymphocytic lymphoma |
| R2 | T2 | T3 | associated_with | TRAF2,chronic lymphocytic leukemia/small lymphocytic lymphoma |
| R3 | T4 | T5 | associated_with | BCL-2,chronic lymphocytic leukemia/small lymphocytic lymphoma |
| R4 | T6 | T7 | associated_with | B cell activating factor,chronic lymphocytic leukemia/small lymphocytic lymphoma |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 89-117 | HP_0005550 | denotes | chronic lymphocytic leukemia |
| T6 | 109-117 | HP_0001909 | denotes | leukemia |
| T7 | 136-144 | HP_0002665 | denotes | lymphoma |
| T8 | 235-243 | HP_0001417 | denotes | X-linked |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 22711886-10#37#42#gene7186 | 37-42 | gene7186 | denotes | TRAF2 |
| 22711886-10#70#75#gene596 | 70-75 | gene596 | denotes | BCL-2 |
| 22711886-10#316#340#gene10673 | 316-340 | gene10673 | denotes | B cell activating factor |
| 22711886-10#89#144#diseaseC1302547 | 89-144 | diseaseC1302547 | denotes | chronic lymphocytic leukemia/small lymphocytic lymphoma |
| 37#42#gene718689#144#diseaseC1302547 | 22711886-10#37#42#gene7186 | 22711886-10#89#144#diseaseC1302547 | associated_with | TRAF2,chronic lymphocytic leukemia/small lymphocytic lymphoma |
| 70#75#gene59689#144#diseaseC1302547 | 22711886-10#70#75#gene596 | 22711886-10#89#144#diseaseC1302547 | associated_with | BCL-2,chronic lymphocytic leukemia/small lymphocytic lymphoma |
| 316#340#gene1067389#144#diseaseC1302547 | 22711886-10#316#340#gene10673 | 22711886-10#89#144#diseaseC1302547 | associated_with | B cell activating factor,chronic lymphocytic leukemia/small lymphocytic lymphoma |