PubMed:2105528 JSONTXT

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    jnlpba-st-training

    {"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":13,"end":34},"obj":"protein"},{"id":"T2","span":{"begin":49,"end":72},"obj":"DNA"},{"id":"T3","span":{"begin":73,"end":94},"obj":"DNA"},{"id":"T4","span":{"begin":112,"end":169},"obj":"DNA"},{"id":"T5","span":{"begin":204,"end":253},"obj":"protein"},{"id":"T6","span":{"begin":259,"end":277},"obj":"DNA"},{"id":"T7","span":{"begin":322,"end":327},"obj":"protein"},{"id":"T8","span":{"begin":332,"end":337},"obj":"protein"},{"id":"T9","span":{"begin":398,"end":419},"obj":"DNA"},{"id":"T10","span":{"begin":434,"end":471},"obj":"DNA"},{"id":"T11","span":{"begin":477,"end":495},"obj":"DNA"},{"id":"T12","span":{"begin":541,"end":546},"obj":"protein"},{"id":"T13","span":{"begin":551,"end":556},"obj":"protein"},{"id":"T14","span":{"begin":666,"end":689},"obj":"protein"}],"text":"Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.\nActivity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins. Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers. The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar. The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation."}

    pubmed-sentences-benchmark

    {"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":95},"obj":"Sentence"},{"id":"S2","span":{"begin":96,"end":254},"obj":"Sentence"},{"id":"S3","span":{"begin":255,"end":472},"obj":"Sentence"},{"id":"S4","span":{"begin":473,"end":599},"obj":"Sentence"},{"id":"S5","span":{"begin":600,"end":766},"obj":"Sentence"}],"text":"Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.\nActivity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins. Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers. The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar. The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation."}

    genia-medco-coref

    {"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":34},"obj":"NP"},{"id":"C2","span":{"begin":35,"end":39},"obj":"NP"},{"id":"C3","span":{"begin":45,"end":94},"obj":"NP"},{"id":"C4","span":{"begin":255,"end":277},"obj":"NP"},{"id":"C5","span":{"begin":292,"end":296},"obj":"NP"},{"id":"C6","span":{"begin":304,"end":337},"obj":"NP"},{"id":"C7","span":{"begin":339,"end":343},"obj":"NP"},{"id":"C8","span":{"begin":394,"end":471},"obj":"NP"},{"id":"C9","span":{"begin":473,"end":495},"obj":"NP"},{"id":"C10","span":{"begin":500,"end":530},"obj":"NP"},{"id":"C11","span":{"begin":536,"end":556},"obj":"NP"},{"id":"C12","span":{"begin":600,"end":616},"obj":"NP"},{"id":"C13","span":{"begin":651,"end":656},"obj":"NP"},{"id":"C14","span":{"begin":709,"end":726},"obj":"NP"},{"id":"C15","span":{"begin":727,"end":731},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C2","obj":"C1"},{"id":"R2","pred":"coref-relat","subj":"C5","obj":"C4"},{"id":"R3","pred":"coref-relat","subj":"C7","obj":"C6"},{"id":"R4","pred":"coref-ident","subj":"C8","obj":"C3"},{"id":"R5","pred":"coref-ident","subj":"C9","obj":"C4"},{"id":"R6","pred":"coref-ident","subj":"C10","obj":"C9"},{"id":"R7","pred":"coref-ident","subj":"C11","obj":"C6"},{"id":"R8","pred":"coref-ident","subj":"C12","obj":"C11"},{"id":"R9","pred":"coref-pron","subj":"C13","obj":"C12"},{"id":"R10","pred":"coref-relat","subj":"C15","obj":"C14"}],"text":"Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.\nActivity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins. Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers. The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar. The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation."}

    GENIAcorpus

    {"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":13,"end":34},"obj":"protein_family_or_group"},{"id":"T2","span":{"begin":49,"end":72},"obj":"DNA_domain_or_region"},{"id":"T3","span":{"begin":73,"end":94},"obj":"DNA_domain_or_region"},{"id":"T4","span":{"begin":204,"end":214},"obj":"protein_family_or_group"},{"id":"T5","span":{"begin":219,"end":253},"obj":"protein_family_or_group"},{"id":"T6","span":{"begin":259,"end":277},"obj":"DNA_molecule"},{"id":"T7","span":{"begin":322,"end":327},"obj":"protein_molecule"},{"id":"T8","span":{"begin":332,"end":337},"obj":"protein_molecule"},{"id":"T9","span":{"begin":398,"end":419},"obj":"DNA_domain_or_region"},{"id":"T10","span":{"begin":477,"end":495},"obj":"DNA_family_or_group"},{"id":"T11","span":{"begin":541,"end":546},"obj":"protein_molecule"},{"id":"T12","span":{"begin":551,"end":556},"obj":"protein_molecule"},{"id":"T13","span":{"begin":741,"end":765},"obj":"other_name"}],"text":"Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.\nActivity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins. Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers. The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar. The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation."}

    bionlp-st-gro-2013-training

    {"project":"bionlp-st-gro-2013-training","denotations":[{"id":"T1","span":{"begin":13,"end":34},"obj":"TranscriptionFactor"},{"id":"T3","span":{"begin":49,"end":63},"obj":"Gene"},{"id":"T4","span":{"begin":64,"end":72},"obj":"Enhancer"},{"id":"T5","span":{"begin":73,"end":94},"obj":"DNARegion"},{"id":"T6","span":{"begin":112,"end":126},"obj":"Protein"},{"id":"T7","span":{"begin":127,"end":132},"obj":"Peptide"},{"id":"T8","span":{"begin":137,"end":154},"obj":"Peptide"},{"id":"T9","span":{"begin":155,"end":159},"obj":"Gene"},{"id":"T10","span":{"begin":160,"end":169},"obj":"Enhancer"},{"id":"T12","span":{"begin":245,"end":253},"obj":"Protein"},{"id":"T13","span":{"begin":259,"end":277},"obj":"DNA"},{"id":"T14","span":{"begin":304,"end":312},"obj":"Protein"},{"id":"T15","span":{"begin":322,"end":327},"obj":"TranscriptionFactor"},{"id":"T16","span":{"begin":332,"end":337},"obj":"TranscriptionFactor"},{"id":"T18","span":{"begin":374,"end":378},"obj":"Cell"},{"id":"T20","span":{"begin":398,"end":419},"obj":"DNARegion"},{"id":"T21","span":{"begin":434,"end":439},"obj":"Peptide"},{"id":"T22","span":{"begin":444,"end":461},"obj":"Peptide"},{"id":"T23","span":{"begin":462,"end":471},"obj":"Enhancer"},{"id":"T24","span":{"begin":477,"end":495},"obj":"DNA"},{"id":"T25","span":{"begin":525,"end":530},"obj":"Gene"},{"id":"T26","span":{"begin":541,"end":546},"obj":"TranscriptionFactor"},{"id":"T27","span":{"begin":551,"end":556},"obj":"TranscriptionFactor"},{"id":"T28","span":{"begin":608,"end":616},"obj":"Protein"},{"id":"T30","span":{"begin":666,"end":689},"obj":"bHLH"},{"id":"T31","span":{"begin":720,"end":726},"obj":"ProteinDomain"},{"id":"E1","span":{"begin":40,"end":44},"obj":"BindingOfTFToTFBindingSiteOfDNA"},{"id":"E2","span":{"begin":235,"end":244},"obj":"RegulatoryProcess"},{"id":"E3","span":{"begin":348,"end":357},"obj":"GeneExpression"},{"id":"E4","span":{"begin":389,"end":393},"obj":"BindingOfTFToTFBindingSiteOfDNA"},{"id":"E5","span":{"begin":617,"end":625},"obj":"BindingToProtein"},{"id":"E6","span":{"begin":732,"end":740},"obj":"RegulatoryProcess"},{"id":"E7","span":{"begin":741,"end":754},"obj":"Transcription"},{"id":"E8","span":{"begin":755,"end":765},"obj":"PositiveRegulation"}],"relations":[{"id":"R1","pred":"hasPart","subj":"T3","obj":"T4"},{"id":"R3","pred":"hasPart","subj":"T6","obj":"T7"},{"id":"R4","pred":"hasPart","subj":"T6","obj":"T8"},{"id":"R5","pred":"encodes","subj":"T9","obj":"T7"},{"id":"R6","pred":"encodes","subj":"T9","obj":"T8"},{"id":"R7","pred":"hasPart","subj":"T9","obj":"T10"},{"id":"R8","pred":"encodes","subj":"T13","obj":"T15"},{"id":"R9","pred":"encodes","subj":"T13","obj":"T16"},{"id":"R10","pred":"locatedIn","subj":"E3","obj":"T18"},{"id":"R11","pred":"hasPart","subj":"T21","obj":"T23"},{"id":"R12","pred":"hasPart","subj":"T22","obj":"T23"},{"id":"R13","pred":"hasPart","subj":"T23","obj":"T20"},{"id":"R2","pred":"hasPart","subj":"T28","obj":"T30"},{"id":"R4","pred":"hasAgent","subj":"T1","obj":"E1"},{"id":"R5","pred":"hasPatient","subj":"T5","obj":"E1"},{"id":"R6","pred":"hasPatient","subj":"T12","obj":"E2"},{"id":"R7","pred":"hasPatient","subj":"T20","obj":"E4"},{"id":"R8","pred":"hasPatient","subj":"T28","obj":"E5"},{"id":"R9","pred":"hasAgent","subj":"T31","obj":"E6"},{"id":"R10","pred":"hasPatient","subj":"E8","obj":"E6"},{"id":"R11","pred":"hasPatient","subj":"E7","obj":"E8"}],"text":"Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.\nActivity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins. Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers. The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar. The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation."}