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PubMed:2105528 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 13-34 protein denotes transcription factors
T2 49-72 DNA denotes immunoglobulin enhancer
T3 73-94 DNA denotes microE5/kappa 2 motif
T4 112-169 DNA denotes immunoglobulin heavy and kappa light chain gene enhancers
T5 204-253 protein denotes ubiquitous and developmentally regulated proteins
T6 259-277 DNA denotes complementary DNAs
T7 322-327 protein denotes ITF-1
T8 332-337 protein denotes ITF-2
T9 398-419 DNA denotes microE5/kappa 2 motif
T10 434-471 DNA denotes heavy and kappa light chain enhancers
T11 477-495 DNA denotes complementary DNAs
T12 541-546 protein denotes ITF-1
T13 551-556 protein denotes ITF-2
T14 666-689 protein denotes helix-loop-helix motifs

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-95 Sentence denotes Two distinct transcription factors that bind the immunoglobulin enhancer microE5/kappa 2 motif.
S2 96-254 Sentence denotes Activity of the immunoglobulin heavy and kappa light chain gene enhancers depends on a complex interplay of ubiquitous and developmentally regulated proteins.
S3 255-472 Sentence denotes Two complementary DNAs were isolated that encode proteins, denoted ITF-1 and ITF-2, that are expressed in a variety of cell types and bind the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers.
S4 473-599 Sentence denotes The complementary DNAs are the products of distinct genes, yet both ITF-1 and ITF-2 are structurally and functionally similar.
S5 600-766 Sentence denotes The two proteins interact with one another through their putative helix-loop-helix motifs and each possesses a distinct domain that dictates transcription activation.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-34 NP denotes Two distinct transcription factors
C2 35-39 NP denotes that
C3 45-94 NP denotes the immunoglobulin enhancer microE5/kappa 2 motif
C4 255-277 NP denotes Two complementary DNAs
C5 292-296 NP denotes that
C6 304-337 NP denotes proteins, denoted ITF-1 and ITF-2
C7 339-343 NP denotes that
C8 394-471 NP denotes the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers
C9 473-495 NP denotes The complementary DNAs
C10 500-530 NP denotes the products of distinct genes
C11 536-556 NP denotes both ITF-1 and ITF-2
C12 600-616 NP denotes The two proteins
C13 651-656 NP denotes their
C14 709-726 NP denotes a distinct domain
C15 727-731 NP denotes that
R1 C2 C1 coref-relat that,Two distinct transcription factors
R2 C5 C4 coref-relat that,Two complementary DNAs
R3 C7 C6 coref-relat that,"proteins, denoted ITF-1 and ITF-2"
R4 C8 C3 coref-ident the microE5/kappa 2 motif found in both heavy and kappa light chain enhancers,the immunoglobulin enhancer microE5/kappa 2 motif
R5 C9 C4 coref-ident The complementary DNAs,Two complementary DNAs
R6 C10 C9 coref-ident the products of distinct genes,The complementary DNAs
R7 C11 C6 coref-ident both ITF-1 and ITF-2,"proteins, denoted ITF-1 and ITF-2"
R8 C12 C11 coref-ident The two proteins,both ITF-1 and ITF-2
R9 C13 C12 coref-pron their,The two proteins
R10 C15 C14 coref-relat that,a distinct domain

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 13-34 protein_family_or_group denotes transcription factors
T2 49-72 DNA_domain_or_region denotes immunoglobulin enhancer
T3 73-94 DNA_domain_or_region denotes microE5/kappa 2 motif
T4 204-214 protein_family_or_group denotes ubiquitous
T5 219-253 protein_family_or_group denotes developmentally regulated proteins
T6 259-277 DNA_molecule denotes complementary DNAs
T7 322-327 protein_molecule denotes ITF-1
T8 332-337 protein_molecule denotes ITF-2
T9 398-419 DNA_domain_or_region denotes microE5/kappa 2 motif
T10 477-495 DNA_family_or_group denotes complementary DNAs
T11 541-546 protein_molecule denotes ITF-1
T12 551-556 protein_molecule denotes ITF-2
T13 741-765 other_name denotes transcription activation

bionlp-st-gro-2013-training

Id Subject Object Predicate Lexical cue
T1 13-34 TranscriptionFactor denotes transcription factors
T3 49-63 Gene denotes immunoglobulin
T4 64-72 Enhancer denotes enhancer
T5 73-94 DNARegion denotes microE5/kappa 2 motif
T6 112-126 Protein denotes immunoglobulin
T7 127-132 Peptide denotes heavy
T8 137-154 Peptide denotes kappa light chain
T9 155-159 Gene denotes gene
T10 160-169 Enhancer denotes enhancers
T12 245-253 Protein denotes proteins
T13 259-277 DNA denotes complementary DNAs
T14 304-312 Protein denotes proteins
T15 322-327 TranscriptionFactor denotes ITF-1
T16 332-337 TranscriptionFactor denotes ITF-2
T18 374-378 Cell denotes cell
T20 398-419 DNARegion denotes microE5/kappa 2 motif
T21 434-439 Peptide denotes heavy
T22 444-461 Peptide denotes kappa light chain
T23 462-471 Enhancer denotes enhancers
T24 477-495 DNA denotes complementary DNAs
T25 525-530 Gene denotes genes
T26 541-546 TranscriptionFactor denotes ITF-1
T27 551-556 TranscriptionFactor denotes ITF-2
T28 608-616 Protein denotes proteins
T30 666-689 bHLH denotes helix-loop-helix motifs
T31 720-726 ProteinDomain denotes domain
E1 40-44 BindingOfTFToTFBindingSiteOfDNA denotes bind
E2 235-244 RegulatoryProcess denotes regulated
E3 348-357 GeneExpression denotes expressed
E4 389-393 BindingOfTFToTFBindingSiteOfDNA denotes bind
E5 617-625 BindingToProtein denotes interact
E6 732-740 RegulatoryProcess denotes dictates
E7 741-754 Transcription denotes transcription
E8 755-765 PositiveRegulation denotes activation
R1 T3 T4 hasPart immunoglobulin,enhancer
R3 T6 T7 hasPart immunoglobulin,heavy
R4 T6 T8 hasPart immunoglobulin,kappa light chain
R5 T9 T7 encodes gene,heavy
R6 T9 T8 encodes gene,kappa light chain
R7 T9 T10 hasPart gene,enhancers
R8 T13 T15 encodes complementary DNAs,ITF-1
R9 T13 T16 encodes complementary DNAs,ITF-2
R10 E3 T18 locatedIn expressed,cell
R11 T21 T23 hasPart heavy,enhancers
R12 T22 T23 hasPart kappa light chain,enhancers
R13 T23 T20 hasPart enhancers,microE5/kappa 2 motif
R2 T28 T30 hasPart proteins,helix-loop-helix motifs
R4 T1 E1 hasAgent transcription factors,bind
R5 T5 E1 hasPatient microE5/kappa 2 motif,bind
R6 T12 E2 hasPatient proteins,regulated
R7 T20 E4 hasPatient microE5/kappa 2 motif,bind
R8 T28 E5 hasPatient proteins,interact
R9 T31 E6 hasAgent domain,dictates
R10 E8 E6 hasPatient activation,dictates
R11 E7 E8 hasPatient transcription,activation