PubMed:16005859
Annnotations
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 66-69 | Glycan_Motif | denotes | GD3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G98544DH|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81928IQ |
| T3 | 71-74 | Glycan_Motif | denotes | GT3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G93899SO|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G33570YF |
| T5 | 76-79 | Glycan_Motif | denotes | GM2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G79389NT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G61168WC |
| T7 | 81-84 | Glycan_Motif | denotes | GD2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G41759HA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G02657AK |
| T9 | 86-89 | Glycan_Motif | denotes | GT2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G36476BA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G35228ZS |
| T11 | 91-94 | Glycan_Motif | denotes | GM1 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48558GR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46613JI |
| T13 | 100-104 | Glycan_Motif | denotes | GD1a | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G69277LC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46677TE |
| T15 | 576-579 | Glycan_Motif | denotes | GD3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G98544DH|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81928IQ |
| T17 | 664-667 | Glycan_Motif | denotes | GT3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G93899SO|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G33570YF |
| T19 | 776-779 | Glycan_Motif | denotes | GM2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G79389NT|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G61168WC |
| T21 | 865-868 | Glycan_Motif | denotes | GD2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G41759HA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G02657AK |
| T23 | 978-981 | Glycan_Motif | denotes | GT2 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G36476BA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G35228ZS |
| T25 | 1119-1122 | Glycan_Motif | denotes | GM1 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48558GR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46613JI |
| T27 | 1363-1366 | Glycan_Motif | denotes | GM1 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48558GR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46613JI |
| T29 | 1380-1384 | Glycan_Motif | denotes | GD1a | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G69277LC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46677TE |
| T31 | 1569-1588 | Glycan_Motif | denotes | N-acetylglucosamine | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G64581RP |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 66-69 | https://glytoucan.org/Structures/Glycans/G81928IQ | denotes | GD3 |
| T2 | 66-69 | https://glytoucan.org/Structures/Glycans/G98544DH | denotes | GD3 |
| T3 | 71-74 | https://glytoucan.org/Structures/Glycans/G33570YF | denotes | GT3 |
| T4 | 71-74 | https://glytoucan.org/Structures/Glycans/G93899SO | denotes | GT3 |
| T5 | 76-79 | https://glytoucan.org/Structures/Glycans/G61168WC | denotes | GM2 |
| T6 | 76-79 | https://glytoucan.org/Structures/Glycans/G79389NT | denotes | GM2 |
| T7 | 81-84 | https://glytoucan.org/Structures/Glycans/G02657AK | denotes | GD2 |
| T8 | 81-84 | https://glytoucan.org/Structures/Glycans/G41759HA | denotes | GD2 |
| T9 | 86-89 | https://glytoucan.org/Structures/Glycans/G35228ZS | denotes | GT2 |
| T10 | 86-89 | https://glytoucan.org/Structures/Glycans/G36476BA | denotes | GT2 |
| T11 | 91-94 | https://glytoucan.org/Structures/Glycans/G46613JI | denotes | GM1 |
| T12 | 91-94 | https://glytoucan.org/Structures/Glycans/G48558GR | denotes | GM1 |
| T13 | 100-104 | https://glytoucan.org/Structures/Glycans/G46677TE | denotes | GD1a |
| T14 | 100-104 | https://glytoucan.org/Structures/Glycans/G69277LC | denotes | GD1a |
| T15 | 576-579 | https://glytoucan.org/Structures/Glycans/G81928IQ | denotes | GD3 |
| T16 | 576-579 | https://glytoucan.org/Structures/Glycans/G98544DH | denotes | GD3 |
| T17 | 664-667 | https://glytoucan.org/Structures/Glycans/G33570YF | denotes | GT3 |
| T18 | 664-667 | https://glytoucan.org/Structures/Glycans/G93899SO | denotes | GT3 |
| T19 | 776-779 | https://glytoucan.org/Structures/Glycans/G61168WC | denotes | GM2 |
| T20 | 776-779 | https://glytoucan.org/Structures/Glycans/G79389NT | denotes | GM2 |
| T21 | 865-868 | https://glytoucan.org/Structures/Glycans/G02657AK | denotes | GD2 |
| T22 | 865-868 | https://glytoucan.org/Structures/Glycans/G41759HA | denotes | GD2 |
| T23 | 978-981 | https://glytoucan.org/Structures/Glycans/G35228ZS | denotes | GT2 |
| T24 | 978-981 | https://glytoucan.org/Structures/Glycans/G36476BA | denotes | GT2 |
| T25 | 1119-1122 | https://glytoucan.org/Structures/Glycans/G46613JI | denotes | GM1 |
| T26 | 1119-1122 | https://glytoucan.org/Structures/Glycans/G48558GR | denotes | GM1 |
| T27 | 1363-1366 | https://glytoucan.org/Structures/Glycans/G46613JI | denotes | GM1 |
| T28 | 1363-1366 | https://glytoucan.org/Structures/Glycans/G48558GR | denotes | GM1 |
| T29 | 1380-1384 | https://glytoucan.org/Structures/Glycans/G46677TE | denotes | GD1a |
| T30 | 1380-1384 | https://glytoucan.org/Structures/Glycans/G69277LC | denotes | GD1a |
| T31 | 1569-1588 | https://glytoucan.org/Structures/Glycans/G64581RP | denotes | N-acetylglucosamine |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-105 | Sentence | denotes | Chemoenzymatic synthesis of 2-azidoethyl-ganglio-oligosaccharides GD3, GT3, GM2, GD2, GT2, GM1, and GD1a. |
| TextSentencer_T2 | 106-222 | Sentence | denotes | We have synthesized several ganglio-oligosaccharide structures using glycosyltransferases from Campylobacter jejuni. |
| TextSentencer_T3 | 223-510 | Sentence | denotes | The enzymes, alpha-(2-->3/8)-sialyltransferase (Cst-II), beta-(1-->4)-N-acetylgalactosaminyltransferase (CgtA), and beta-(1-->3)-galactosyltransferase (CgtB), were produced in large-scale fermentation from Escherichia coli and further characterized based on their acceptor specificities. |
| TextSentencer_T4 | 511-1272 | Sentence | denotes | 2-Azidoethyl-glycosides corresponding to the oligosaccharides of GD3 (alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->4)-beta-D-Glcp-), GT3 (alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->4)-beta-D-Glcp-), GM2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), GD2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), GT2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), and GM1 (beta-D-Galp-(1-->3)-beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-) were synthesized in high yields (gram-scale). |
| TextSentencer_T5 | 1273-1529 | Sentence | denotes | In addition, a mammalian alpha-(2-->3)-sialyltransferase (ST3Gal I) was used to sialylate GM1 and generate GD1a (alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->3)-beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-) oligosaccharide. |
| TextSentencer_T6 | 1530-1712 | Sentence | denotes | We also cloned and expressed a rat UDP-N-acetylglucosamine-4'epimerase (GalNAcE) in E. coli AD202 cells for cost saving in situ conversion of less expensive UDP-GlcNAc to UDP-GalNAc. |
| T1 | 0-105 | Sentence | denotes | Chemoenzymatic synthesis of 2-azidoethyl-ganglio-oligosaccharides GD3, GT3, GM2, GD2, GT2, GM1, and GD1a. |
| T2 | 106-222 | Sentence | denotes | We have synthesized several ganglio-oligosaccharide structures using glycosyltransferases from Campylobacter jejuni. |
| T3 | 223-510 | Sentence | denotes | The enzymes, alpha-(2-->3/8)-sialyltransferase (Cst-II), beta-(1-->4)-N-acetylgalactosaminyltransferase (CgtA), and beta-(1-->3)-galactosyltransferase (CgtB), were produced in large-scale fermentation from Escherichia coli and further characterized based on their acceptor specificities. |
| T4 | 511-1272 | Sentence | denotes | 2-Azidoethyl-glycosides corresponding to the oligosaccharides of GD3 (alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->4)-beta-D-Glcp-), GT3 (alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->4)-beta-D-Glcp-), GM2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), GD2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), GT2 (beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->8)-alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-), and GM1 (beta-D-Galp-(1-->3)-beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-) were synthesized in high yields (gram-scale). |
| T5 | 1273-1529 | Sentence | denotes | In addition, a mammalian alpha-(2-->3)-sialyltransferase (ST3Gal I) was used to sialylate GM1 and generate GD1a (alpha-D-Neup5Ac-(2-->3)-beta-D-Galp-(1-->3)-beta-D-GalpNAc-(1-->4)-[alpha-D-Neup5Ac-(2-->3)]-beta-D-Galp-(1-->4)-beta-D-Glcp-) oligosaccharide. |
| T6 | 1530-1712 | Sentence | denotes | We also cloned and expressed a rat UDP-N-acetylglucosamine-4'epimerase (GalNAcE) in E. coli AD202 cells for cost saving in situ conversion of less expensive UDP-GlcNAc to UDP-GalNAc. |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 71-74 | http://www.glycoepitope.jp/epitopes/EP0070 | denotes | GT3 |
| T2 | 91-94 | http://www.glycoepitope.jp/epitopes/EP0050 | denotes | GM1 |
| T3 | 100-104 | http://www.glycoepitope.jp/epitopes/EP0056 | denotes | GD1a |
| T4 | 664-667 | http://www.glycoepitope.jp/epitopes/EP0070 | denotes | GT3 |
| T5 | 1119-1122 | http://www.glycoepitope.jp/epitopes/EP0050 | denotes | GM1 |
| T6 | 1363-1366 | http://www.glycoepitope.jp/epitopes/EP0050 | denotes | GM1 |
| T7 | 1380-1384 | http://www.glycoepitope.jp/epitopes/EP0056 | denotes | GD1a |
NGLY1-deficiency
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-NGLY1-deficiency-B_T1 | 1569-1588 | chem:24139 | denotes | N-acetylglucosamine |
| PD-NGLY1-deficiency-B_T2 | 1691-1697 | chem:24139 | denotes | GlcNAc |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 66-69 | Glycan | denotes | GD3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G98544DH |
| T2 | 71-74 | Glycan | denotes | GT3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G93899SO |
| T3 | 76-79 | Glycan | denotes | GM2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G79389NT |
| T4 | 81-84 | Glycan | denotes | GD2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G02657AK |
| T5 | 86-89 | Glycan | denotes | GT2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G36476BA |
| T6 | 91-94 | Glycan | denotes | GM1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G48558GR |
| T7 | 100-104 | Glycan | denotes | GD1a | https://api.glycosmos.org/wurcs2image/latest/png/binary/G46677TE |
| T8 | 576-579 | Glycan | denotes | GD3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G98544DH |
| T9 | 664-667 | Glycan | denotes | GT3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G93899SO |
| T10 | 776-779 | Glycan | denotes | GM2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G79389NT |
| T11 | 865-868 | Glycan | denotes | GD2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G02657AK |
| T12 | 978-981 | Glycan | denotes | GT2 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G36476BA |
| T13 | 1119-1122 | Glycan | denotes | GM1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G48558GR |
| T14 | 1363-1366 | Glycan | denotes | GM1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G48558GR |
| T15 | 1380-1384 | Glycan | denotes | GD1a | https://api.glycosmos.org/wurcs2image/latest/png/binary/G46677TE |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 201-221 | OrganismTaxon | denotes | Campylobacter jejuni | 197 |
| T2 | 429-445 | OrganismTaxon | denotes | Escherichia coli | 562 |
| T3 | 1561-1564 | OrganismTaxon | denotes | rat | 10114|10116 |
| T5 | 1614-1621 | OrganismTaxon | denotes | E. coli | 562 |
Glycosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 71-74 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GT3 | http://www.glycoepitope.jp/epitopes/EP0070 |
| T2 | 91-94 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T3 | 100-104 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GD1a | http://www.glycoepitope.jp/epitopes/EP0056 |
| T4 | 664-667 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GT3 | http://www.glycoepitope.jp/epitopes/EP0070 |
| T5 | 1119-1122 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T6 | 1363-1366 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T7 | 1380-1384 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GD1a | http://www.glycoepitope.jp/epitopes/EP0056 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 405-410 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T2 | 1265-1270 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |