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PubMed:11424320 JSONTXT

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disease_gene_microbe_small

Id	Subject	Object	Predicate	Lexical cue
T0	25-51	DOID:0050589	denotes	inflammatory bowel disease
T1	105-131	DOID:0050589	denotes	nflammatory bowel disease
T2	152-165	DOID:8778	denotes	rohn disease,
T3	610-623	DOID:8778	denotes	rohn disease,
T4	628-646	DOID:8577	denotes	lcerative colitis
T5	724-737	DOID:8778	denotes	rohn disease,
T6	1434-1452	DOID:8577	denotes	lcerative colitis
T7	1632-1645	DOID:8778	denotes	rohn disease.
T8	0-21	taxonomy:1280	denotes	Staphylococcus aureus
T9	234-248	taxonomy:1279	denotes	taphylococcal
T10	331-345	taxonomy:1279	denotes	taphylococcal
T11	402-423	taxonomy:1280	denotes	taphylococcus aureus
T12	1130-1139	taxonomy:1280	denotes	. aureus
T13	1528-1542	taxonomy:1279	denotes	taphylococcal
T14	1656-1665	taxonomy:1280	denotes	. aureus

Inflammaging

Id	Subject	Object	Predicate	Lexical cue
T1	0-52	Sentence	denotes	Staphylococcus aureus in inflammatory bowel disease.
T2	53-64	Sentence	denotes	BACKGROUND:
T3	65-232	Sentence	denotes	The potential role of superantigens in inflammatory bowel disease (IBD), particularly Crohn disease, has been broached in studies of the functions of T cell receptors.
T4	233-308	Sentence	denotes	Staphylococcal cells have been found in intestinal lymph follicles of IBDs.
T5	309-529	Sentence	denotes	To clarify a role of staphylococcal superantigens in IBD, we attempted to determine whether Staphylococcus aureus could be detected in intestinal mucosa, including surgical specimens and lymph follicles of initial cases.
T6	530-538	Sentence	denotes	METHODS:
T7	539-719	Sentence	denotes	One-hundred-and-six colonic and ileal specimens were obtained from 38 Crohn disease, 25 ulcerative colitis and 36 non-IBD patients through therapeutic surgery or endoscopic biopsy.
T8	720-817	Sentence	denotes	In Crohn disease, 23 surgical specimens and 11 biopsy specimens from initial cases were included.
T9	818-931	Sentence	denotes	DNA was extracted with phenol-chloroform after homogenization and proteinase K treatment in 73 mucosal specimens.
T10	932-1051	Sentence	denotes	Using an inverted microscope, lymph follicle tissue was microdissected from the remaining 33, mostly biopsy, specimens.
T11	1052-1093	Sentence	denotes	DNA was then extracted by freeze-thawing.
T12	1094-1150	Sentence	denotes	A coagulase gene characteristic of S. aureus was sought.
T13	1151-1262	Sentence	denotes	A nested polymerase chain reaction was performed utilizing primers that amplify a region of the coagulase gene.
T14	1263-1352	Sentence	denotes	Polymerase chain reaction products were analyzed with polyacrylamide gel electrophoresis.
T15	1353-1361	Sentence	denotes	RESULTS:
T16	1362-1513	Sentence	denotes	Only one surgically resected colonic specimen, from a 42-year-old male ulcerative colitis patient, registered positive staphylocoagulase amplification.
T17	1514-1526	Sentence	denotes	CONCLUSIONS:
T18	1527-1645	Sentence	denotes	Staphylococcal superantigens are not involved in either the early lesions or the established lesions of Crohn disease.
T19	1646-1723	Sentence	denotes	However, S. aureus infection occasionally may occur during the course of IBD.
T1	0-52	Sentence	denotes	Staphylococcus aureus in inflammatory bowel disease.
T2	53-64	Sentence	denotes	BACKGROUND:
T3	65-232	Sentence	denotes	The potential role of superantigens in inflammatory bowel disease (IBD), particularly Crohn disease, has been broached in studies of the functions of T cell receptors.
T4	233-308	Sentence	denotes	Staphylococcal cells have been found in intestinal lymph follicles of IBDs.
T5	309-529	Sentence	denotes	To clarify a role of staphylococcal superantigens in IBD, we attempted to determine whether Staphylococcus aureus could be detected in intestinal mucosa, including surgical specimens and lymph follicles of initial cases.
T6	530-538	Sentence	denotes	METHODS:
T7	539-719	Sentence	denotes	One-hundred-and-six colonic and ileal specimens were obtained from 38 Crohn disease, 25 ulcerative colitis and 36 non-IBD patients through therapeutic surgery or endoscopic biopsy.
T8	720-817	Sentence	denotes	In Crohn disease, 23 surgical specimens and 11 biopsy specimens from initial cases were included.
T9	818-931	Sentence	denotes	DNA was extracted with phenol-chloroform after homogenization and proteinase K treatment in 73 mucosal specimens.
T10	932-1051	Sentence	denotes	Using an inverted microscope, lymph follicle tissue was microdissected from the remaining 33, mostly biopsy, specimens.
T11	1052-1093	Sentence	denotes	DNA was then extracted by freeze-thawing.
T12	1094-1150	Sentence	denotes	A coagulase gene characteristic of S. aureus was sought.
T13	1151-1262	Sentence	denotes	A nested polymerase chain reaction was performed utilizing primers that amplify a region of the coagulase gene.
T14	1263-1352	Sentence	denotes	Polymerase chain reaction products were analyzed with polyacrylamide gel electrophoresis.
T15	1353-1361	Sentence	denotes	RESULTS:
T16	1362-1513	Sentence	denotes	Only one surgically resected colonic specimen, from a 42-year-old male ulcerative colitis patient, registered positive staphylocoagulase amplification.
T17	1514-1526	Sentence	denotes	CONCLUSIONS:
T18	1527-1645	Sentence	denotes	Staphylococcal superantigens are not involved in either the early lesions or the established lesions of Crohn disease.
T19	1646-1723	Sentence	denotes	However, S. aureus infection occasionally may occur during the course of IBD.