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PubMed:11416158 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 0-3 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T2 0-3 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T3 0-3 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T4 0-3 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T5 0-3 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T6 0-3 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T7 7-11 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T8 7-11 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T9 7-11 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T10 12-36 http://purl.obolibrary.org/obo/SO_0000771 denotes quantitative trait locus
T11 49-72 PS denotes photoperiod sensitivity
T12 86-91 http://purl.obolibrary.org/obo/PR_000001067 denotes alpha
T13 86-91 http://purl.obolibrary.org/obo/CHEBI_30216 denotes alpha
T14 103-110 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T15 103-110 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T16 103-110 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T17 103-110 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T18 103-110 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T19 103-110 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T20 103-117 http://id.nlm.nih.gov/mesh/D011494 denotes protein kinase
T21 103-121 http://id.nlm.nih.gov/mesh/D047390 denotes protein kinase CK2
T22 111-117 http://id.nlm.nih.gov/mesh/D010770 denotes kinase
T23 118-121 http://www.uniprot.org/uniprot/O51759 denotes CK2
T24 118-121 http://www.uniprot.org/uniprot/Q65ZV5 denotes CK2
T25 118-121 http://www.uniprot.org/uniprot/Q7XMI0 denotes CK2
T26 118-121 http://www.uniprot.org/uniprot/Q20230 denotes CK2
T27 118-121 http://www.uniprot.org/uniprot/Q0SM32 denotes CK2
T28 118-121 http://www.uniprot.org/uniprot/P43893 denotes CK2
T29 120-121 AMT1;3 denotes 2
T30 123-126 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T31 123-126 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T32 123-126 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T33 123-126 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T34 123-126 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T35 123-126 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T36 132-156 http://purl.obolibrary.org/obo/SO_0000771 denotes quantitative trait locus
T37 169-173 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T38 169-173 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T39 169-173 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T40 174-197 PS denotes photoperiod sensitivity
T41 202-205 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T42 202-205 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T43 202-205 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T44 202-205 http://id.nlm.nih.gov/mesh/D014923 denotes was
T45 297-300 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T46 297-300 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T47 343-347 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T48 351-354 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T49 351-354 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T50 351-354 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T51 351-354 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T52 351-354 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T53 351-354 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T54 366-371 http://purl.obolibrary.org/obo/PR_000009667 denotes large
T55 366-371 http://purl.obolibrary.org/obo/PR_Q66PG3 denotes large
T56 366-371 http://purl.obolibrary.org/obo/PR_O95461 denotes large
T57 366-371 http://purl.obolibrary.org/obo/PR_Q66PG2 denotes large
T58 366-371 http://purl.obolibrary.org/obo/PR_Q9Z1M7 denotes large
T59 395-398 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T60 395-398 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T61 419-422 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T62 419-422 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T63 428-433 http://purl.obolibrary.org/obo/UBERON_0002542 denotes scale
T64 445-448 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T65 445-448 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T66 445-448 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T67 445-448 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T68 445-448 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T69 445-448 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T70 449-452 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T71 449-452 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T72 465-478 http://purl.obolibrary.org/obo/SO_0000040 denotes genomic clone
T73 473-478 http://purl.obolibrary.org/obo/SO_0000151 denotes clone
T74 498-501 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T75 498-501 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T76 498-501 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T77 498-501 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T78 498-501 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T79 498-501 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T80 502-508 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T81 502-508 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T82 543-553 http://www.ncbi.nlm.nih.gov/taxonomy/32630 denotes artificial
T83 554-564 http://purl.obolibrary.org/obo/GO_0005694 denotes chromosome
T84 554-564 http://purl.obolibrary.org/obo/SO_0000340 denotes chromosome
T85 565-570 http://purl.obolibrary.org/obo/SO_0000151 denotes clone
T86 579-582 http://id.nlm.nih.gov/mesh/D004247 denotes DNA
T87 579-582 http://purl.obolibrary.org/obo/SO_0000352 denotes DNA
T88 579-582 http://purl.obolibrary.org/obo/GO_0005574 denotes DNA
T89 579-582 http://purl.obolibrary.org/obo/CHEBI_16991 denotes DNA
T90 579-590 http://id.nlm.nih.gov/mesh/D005819 denotes DNA markers
T91 579-590 http://id.nlm.nih.gov/mesh/D005819 denotes DNA markers
T92 601-604 http://web.expasy.org/cellosaurus/CVCL_W577 denotes Hd6
T93 601-604 http://www.uniprot.org/uniprot/Q9UBN7 denotes Hd6
T94 601-604 http://web.expasy.org/cellosaurus/CVCL_XD60 denotes Hd6
T95 601-604 http://web.expasy.org/cellosaurus/CVCL_H254 denotes Hd6
T96 601-604 http://purl.obolibrary.org/obo/PR_000008485 denotes Hd6
T97 601-604 http://www.uniprot.org/uniprot/Q9Z2V5 denotes Hd6
T98 605-609 http://www.uniprot.org/uniprot/A7MBU6 denotes to a
T99 626-632 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T100 626-632 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T101 650-654 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T102 668-673 http://purl.obolibrary.org/obo/PR_000001067 denotes alpha
T103 668-673 http://purl.obolibrary.org/obo/CHEBI_30216 denotes alpha
T104 685-692 http://purl.obolibrary.org/obo/CHEBI_11122 denotes protein
T105 685-692 http://purl.obolibrary.org/obo/SO_0000104 denotes protein
T106 685-692 http://purl.obolibrary.org/obo/PR_000000001 denotes protein
T107 685-692 http://purl.obolibrary.org/obo/CHEBI_16541 denotes protein
T108 685-692 http://purl.obolibrary.org/obo/GO_0003675 denotes protein
T109 685-692 http://purl.obolibrary.org/obo/CHEBI_36080 denotes protein
T110 685-699 http://id.nlm.nih.gov/mesh/D011494 denotes protein kinase
T111 685-703 http://id.nlm.nih.gov/mesh/D047390 denotes protein kinase CK2
T112 693-699 http://id.nlm.nih.gov/mesh/D010770 denotes kinase
T113 700-703 http://www.uniprot.org/uniprot/O51759 denotes CK2
T114 700-703 http://www.uniprot.org/uniprot/Q65ZV5 denotes CK2
T115 700-703 http://www.uniprot.org/uniprot/Q7XMI0 denotes CK2
T116 700-703 http://www.uniprot.org/uniprot/Q20230 denotes CK2
T117 700-703 http://www.uniprot.org/uniprot/Q0SM32 denotes CK2
T118 700-703 http://www.uniprot.org/uniprot/P43893 denotes CK2
T119 702-703 AMT1;3 denotes 2
T120 705-708 http://www.uniprot.org/uniprot/O51759 denotes CK2
T121 705-708 http://www.uniprot.org/uniprot/Q65ZV5 denotes CK2
T122 705-708 http://www.uniprot.org/uniprot/Q7XMI0 denotes CK2
T123 705-708 http://www.uniprot.org/uniprot/Q20230 denotes CK2
T124 705-708 http://www.uniprot.org/uniprot/Q0SM32 denotes CK2
T125 705-708 http://www.uniprot.org/uniprot/P43893 denotes CK2
T126 705-714 http://www.uniprot.org/uniprot/P28523 denotes CK2 alpha
T127 705-714 HD6 denotes CK2 alpha
T128 707-708 AMT1;3 denotes 2
T129 709-714 http://purl.obolibrary.org/obo/PR_000001067 denotes alpha
T130 709-714 http://purl.obolibrary.org/obo/CHEBI_30216 denotes alpha
T131 719-723 http://purl.obolibrary.org/obo/PR_000024065 denotes this
T132 719-723 http://purl.obolibrary.org/obo/PR_O32583 denotes this
T133 724-730 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T134 724-730 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T135 747-753 http://purl.obolibrary.org/obo/SO_0001023 denotes allele
T136 757-760 http://www.uniprot.org/uniprot/O51759 denotes CK2
T137 757-760 http://www.uniprot.org/uniprot/Q65ZV5 denotes CK2
T138 757-760 http://www.uniprot.org/uniprot/Q7XMI0 denotes CK2
T139 757-760 http://www.uniprot.org/uniprot/Q20230 denotes CK2
T140 757-760 http://www.uniprot.org/uniprot/Q0SM32 denotes CK2
T141 757-760 http://www.uniprot.org/uniprot/P43893 denotes CK2
T142 757-766 http://www.uniprot.org/uniprot/P28523 denotes CK2 alpha
T143 757-766 HD6 denotes CK2 alpha
T144 759-760 AMT1;3 denotes 2
T145 761-766 http://purl.obolibrary.org/obo/PR_000001067 denotes alpha
T146 761-766 http://purl.obolibrary.org/obo/CHEBI_30216 denotes alpha
T147 778-798 http://id.nlm.nih.gov/mesh/D018389 denotes premature stop codon
T148 788-792 http://www.uniprot.org/uniprot/O73737 denotes stop
T149 788-792 http://www.uniprot.org/uniprot/Q7TSJ2 denotes stop
T150 788-792 http://www.uniprot.org/uniprot/Q63560 denotes stop
T151 788-792 http://www.uniprot.org/uniprot/B0S4Q5 denotes stop
T152 788-792 http://www.uniprot.org/uniprot/Q96JE9 denotes stop
T153 788-792 http://purl.obolibrary.org/obo/PR_000010147 denotes stop
T154 788-798 http://id.nlm.nih.gov/mesh/D018388 denotes stop codon
T155 788-798 http://purl.obolibrary.org/obo/SO_0000319 denotes stop codon
T156 793-798 http://id.nlm.nih.gov/mesh/D003062 denotes codon
T157 793-798 http://purl.obolibrary.org/obo/SO_0000360 denotes codon
T158 800-803 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T159 800-803 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T160 926-932 http://purl.obolibrary.org/obo/SO_0001023 denotes allele
T161 936-939 http://www.uniprot.org/uniprot/O51759 denotes CK2
T162 936-939 http://www.uniprot.org/uniprot/Q65ZV5 denotes CK2
T163 936-939 http://www.uniprot.org/uniprot/Q7XMI0 denotes CK2
T164 936-939 http://www.uniprot.org/uniprot/Q20230 denotes CK2
T165 936-939 http://www.uniprot.org/uniprot/Q0SM32 denotes CK2
T166 936-939 http://www.uniprot.org/uniprot/P43893 denotes CK2
T167 936-945 http://www.uniprot.org/uniprot/P28523 denotes CK2 alpha
T168 936-945 HD6 denotes CK2 alpha
T169 938-939 AMT1;3 denotes 2
T170 940-945 http://purl.obolibrary.org/obo/PR_000001067 denotes alpha
T171 940-945 http://purl.obolibrary.org/obo/CHEBI_30216 denotes alpha
T172 973-976 http://purl.obolibrary.org/obo/PR_P9WK19 denotes Map
T173 973-976 http://www.uniprot.org/uniprot/P56218 denotes Map
T174 973-976 http://www.uniprot.org/uniprot/O52353 denotes Map
T175 973-976 http://purl.obolibrary.org/obo/CHEBI_145457 denotes Map
T176 973-976 http://www.uniprot.org/uniprot/O84859 denotes Map
T177 973-976 http://www.uniprot.org/uniprot/P95963 denotes Map
T178 973-976 http://www.uniprot.org/uniprot/Q9PL68 denotes Map
T179 973-976 http://www.uniprot.org/uniprot/P0A1X7 denotes Map
T180 973-976 http://www.uniprot.org/uniprot/Q59509 denotes Map
T181 973-976 http://www.uniprot.org/uniprot/P0A1X6 denotes Map
T182 973-976 http://purl.obolibrary.org/obo/PR_000014806 denotes Map
T183 973-976 http://purl.obolibrary.org/obo/GO_0004239 denotes Map
T184 973-976 http://www.uniprot.org/uniprot/B6YTG0 denotes Map
T185 973-976 http://www.uniprot.org/uniprot/O83814 denotes Map
T186 973-976 http://www.uniprot.org/uniprot/P50614 denotes Map
T187 973-976 http://www.uniprot.org/uniprot/Q5HN46 denotes Map
T188 973-976 http://www.uniprot.org/uniprot/O51132 denotes Map
T189 973-976 http://www.uniprot.org/uniprot/P99121 denotes Map
T190 973-976 http://www.uniprot.org/uniprot/P0A5J3 denotes Map
T191 973-976 http://www.uniprot.org/uniprot/Q58725 denotes Map
T192 973-976 http://www.uniprot.org/uniprot/Q11132 denotes Map
T193 973-976 http://purl.obolibrary.org/obo/PR_000029173 denotes Map
T194 973-976 http://www.uniprot.org/uniprot/P22624 denotes Map
T195 973-976 http://www.uniprot.org/uniprot/Q8K9T1 denotes Map
T196 973-976 http://www.uniprot.org/uniprot/P47418 denotes Map
T197 973-976 http://www.uniprot.org/uniprot/Q89AP3 denotes Map
T198 973-976 http://www.uniprot.org/uniprot/P79263 denotes Map
T199 973-976 http://www.uniprot.org/uniprot/Q9UYT4 denotes Map
T200 973-976 http://www.uniprot.org/uniprot/Q9ZCD3 denotes Map
T201 973-976 http://www.uniprot.org/uniprot/Q9ZJT0 denotes Map
T202 973-976 http://www.uniprot.org/uniprot/P41392 denotes Map
T203 973-976 http://www.uniprot.org/uniprot/P0AE21 denotes Map
T204 973-976 http://www.uniprot.org/uniprot/Q5HEN6 denotes Map
T205 973-976 http://www.uniprot.org/uniprot/P0AE19 denotes Map
T206 973-976 http://purl.obolibrary.org/obo/PR_P0A078 denotes Map
T207 973-976 http://www.uniprot.org/uniprot/O28438 denotes Map
T208 973-976 http://www.uniprot.org/uniprot/Q8CRU9 denotes Map
T209 973-976 http://www.uniprot.org/uniprot/P57324 denotes Map
T210 973-976 http://www.uniprot.org/uniprot/P0AE18 denotes Map
T211 973-976 http://www.uniprot.org/uniprot/P44421 denotes Map
T212 973-976 http://purl.obolibrary.org/obo/PR_P19994 denotes Map
T213 973-976 http://purl.obolibrary.org/obo/PR_000023165 denotes Map
T214 973-976 http://purl.obolibrary.org/obo/PR_Q96HU1 denotes Map
T215 973-976 http://www.uniprot.org/uniprot/O66489 denotes Map
T216 973-976 http://www.uniprot.org/uniprot/P0A078 denotes Map
T217 973-976 http://purl.obolibrary.org/obo/PR_P0AE18 denotes Map
T218 973-976 http://www.uniprot.org/uniprot/P0A080 denotes Map
T219 973-976 http://www.uniprot.org/uniprot/P69000 denotes Map
T220 973-976 http://www.uniprot.org/uniprot/Q5JGD1 denotes Map
T221 973-976 http://www.uniprot.org/uniprot/O58362 denotes Map
T222 973-976 http://www.uniprot.org/uniprot/P0AE20 denotes Map
T223 973-976 http://www.uniprot.org/uniprot/P56102 denotes Map
T224 973-976 http://www.uniprot.org/uniprot/Q9Z6Q0 denotes Map
T225 973-976 http://www.uniprot.org/uniprot/P0A079 denotes Map
T226 973-976 http://www.uniprot.org/uniprot/O27355 denotes Map
T227 973-976 http://www.uniprot.org/uniprot/P28617 denotes Map
T228 973-976 http://www.uniprot.org/uniprot/Q6GFG9 denotes Map
T229 973-976 http://www.uniprot.org/uniprot/Q6G846 denotes Map
T230 973-976 http://www.uniprot.org/uniprot/Q9Z9J4 denotes Map
T231 1048-1052 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T232 1066-1090 http://purl.obolibrary.org/obo/SO_0000771 denotes quantitative trait locus
T233 1129-1134 SDG725 denotes small

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_11 7-11 hunflair:NA:Species denotes rice
M_12 169-173 hunflair:NA:Species denotes rice
M_13 0-3 hunflair:NA:Gene denotes Hd6
M_14 123-126 hunflair:NA:Gene denotes Hd6
M_15 351-354 hunflair:NA:Gene denotes Hd6
M_16 445-448 hunflair:NA:Gene denotes Hd6
M_17 498-501 hunflair:NA:Gene denotes Hd6
M_18 601-604 hunflair:NA:Gene denotes Hd6
M_19 305-311 hunflair:NA:Species denotes indica
M_20 269-277 hunflair:NA:Species denotes japonica
M_21 705-714 hunflair:NA:Gene denotes CK2 alpha
M_22 757-766 hunflair:NA:Gene denotes CK2 alpha
M_23 936-945 hunflair:NA:Gene denotes CK2 alpha
M_0 145-150 WTO:0000006 denotes trait
M_1 1079-1084 WTO:0000006 denotes trait
M_2 693-699 funRiceGene:512 denotes kinase
M_3 973-990 funRiceGene:79, xzyao:16212 denotes Map-based cloning
M_4 917-932 xzyao:14672 denotes Kasalath allele
M_5 685-699 funRiceGene:313, xzyao:7646 denotes protein kinase
M_6 169-185 xzyao:13298 denotes rice photoperiod
M_7 174-185 WTO:0000097 denotes photoperiod
M_8 693-699 funRiceGene:139 denotes kinase
M_9 86-121 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_10 668-703 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_24 7-11 pubtator:4530:Species denotes rice
M_25 169-173 pubtator:4530:Species denotes rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 532-534 http://identifiers.org/oryzabase.gene/23136 denotes P1
T2 705-714 http://identifiers.org/oryzabase.gene/529 denotes CK2 alpha
T3 757-766 http://identifiers.org/oryzabase.gene/529 denotes CK2 alpha
T4 936-945 http://identifiers.org/oryzabase.gene/529 denotes CK2 alpha
T29899 532-534 http://identifiers.org/rapdb.locus/Os03g0303500 denotes P1
T12333 705-714 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha
T45493 757-766 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha
T31237 936-945 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 49-72 http://identifiers.org/oryzabase.gene/719 denotes photoperiod sensitivity
T2 103-117 http://identifiers.org/oryzabase.gene/21903 denotes protein kinase
T3 103-117 http://identifiers.org/oryzabase.gene/21900 denotes protein kinase
T4 103-117 http://identifiers.org/oryzabase.gene/20466 denotes protein kinase
T5 174-197 http://identifiers.org/oryzabase.gene/719 denotes photoperiod sensitivity
T6 685-699 http://identifiers.org/oryzabase.gene/21903 denotes protein kinase
T7 685-699 http://identifiers.org/oryzabase.gene/21900 denotes protein kinase
T8 685-699 http://identifiers.org/oryzabase.gene/20466 denotes protein kinase

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 917-932 cand:TO:0020038-glume waxiness denotes Kasalath allele
M_1 917-932 cand:PO:0006002-lower glume denotes Kasalath allele
M_2 917-932 cand:PO:0006372-lower glume of tassel spikelet denotes Kasalath allele
M_3 917-932 cand:PO:0006368-glume of tassel spikelet denotes Kasalath allele
M_4 917-932 cand:PO:0025351-glume awn denotes Kasalath allele
M_5 917-932 cand:TO:0006029-glume number denotes Kasalath allele
M_6 917-932 cand:PO:0009025-vascular leaf denotes Kasalath allele
M_7 917-932 cand:PO:0020046-palmate leaf denotes Kasalath allele
M_8 917-932 cand:PO:0025199-branch stele denotes Kasalath allele
M_9 917-932 cand:PO:0004531-sheath cell denotes Kasalath allele
M_10 917-932 cand:TO:1000009-branch angle denotes Kasalath allele
M_11 936-945 GeneID:NA denotes CK2 alpha
T3724 103-121 xzyao:16333 denotes protein kinase CK2
T76070 685-703 xzyao:16333 denotes protein kinase CK2
T26725 111-117 funRiceGene:512 denotes kinase
T98421 693-699 funRiceGene:512 denotes kinase
T23024 111-117 funRiceGene:139 denotes kinase
T50364 693-699 funRiceGene:139 denotes kinase
T36208 973-990 funRiceGene:79, xzyao:10375 denotes Map-based cloning
T13481 278-296 xzyao:32768 denotes variety Nipponbare
T48707 103-117 funRiceGene:313, xzyao:43005 denotes protein kinase
T44251 685-699 funRiceGene:313, xzyao:43005 denotes protein kinase
T42686 808-835 xzyao:5148 denotes resulting truncated product
T18873 1129-1141 xzyao:27965 denotes small effect
M_12 1149-1158 WTO:0000005 denotes phenotype
M_13 12-30 xzyao:12182 denotes quantitative trait
M_14 132-150 xzyao:12182 denotes quantitative trait
M_15 1066-1084 xzyao:12182 denotes quantitative trait
M_16 579-590 xzyao:30570 denotes DNA markers
M_17 25-30 WTO:0000006 denotes trait
M_18 145-150 WTO:0000006 denotes trait
M_19 1079-1084 WTO:0000006 denotes trait
M_20 874-898 xzyao:10171 denotes complementation analysis
M_21 305-319 xzyao:34157 denotes indica variety
M_22 12-36 xzyao:8898 denotes quantitative trait locus
M_23 132-156 xzyao:8898 denotes quantitative trait locus
M_24 1066-1090 xzyao:8898 denotes quantitative trait locus
M_25 7-36 xzyao:29806 denotes rice quantitative trait locus
M_26 341-347 xzyao:15915 denotes a gene
M_27 648-654 xzyao:15915 denotes a gene
M_28 1046-1052 xzyao:15915 denotes a gene
M_29 169-197 xzyao:13929 denotes rice photoperiod sensitivity
M_30 49-60 WTO:0000097 denotes photoperiod
M_31 174-185 WTO:0000097 denotes photoperiod
M_32 49-72 xzyao:24512 denotes photoperiod sensitivity
M_33 174-197 xzyao:24512 denotes photoperiod sensitivity
M_34 0-3 hunflair:NA:Gene denotes Hd6
M_35 123-126 hunflair:NA:Gene denotes Hd6
M_36 351-354 hunflair:NA:Gene denotes Hd6
M_37 445-448 hunflair:NA:Gene denotes Hd6
M_38 498-501 hunflair:NA:Gene denotes Hd6
M_39 601-604 hunflair:NA:Gene denotes Hd6
M_40 705-714 hunflair:NA:Gene denotes CK2 alpha
M_41 757-766 hunflair:NA:Gene denotes CK2 alpha
M_42 936-945 hunflair:NA:Gene denotes CK2 alpha
M_43 86-121 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_44 668-703 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_45 269-277 hunflair:NA:Species denotes japonica
M_46 7-11 hunflair:NA:Species denotes rice
M_47 169-173 hunflair:NA:Species denotes rice
M_48 305-311 hunflair:NA:Species denotes indica
M_49 7-11 pubtator:4530:Species denotes rice
M_50 169-173 pubtator:4530:Species denotes rice

PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 61-72 DiseaseOrPhenotypicFeature denotes sensitivity 0000605
T2 186-197 DiseaseOrPhenotypicFeature denotes sensitivity 0000605

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 86-121 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_1 668-703 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_2 0-3 hunflair:NA:Gene denotes Hd6
M_3 123-126 hunflair:NA:Gene denotes Hd6
M_4 351-354 hunflair:NA:Gene denotes Hd6
M_5 445-448 hunflair:NA:Gene denotes Hd6
M_6 498-501 hunflair:NA:Gene denotes Hd6
M_7 601-604 hunflair:NA:Gene denotes Hd6
M_8 305-311 hunflair:NA:Species denotes indica
M_9 269-277 hunflair:NA:Species denotes japonica
M_10 705-714 hunflair:NA:Gene denotes CK2 alpha
M_11 757-766 hunflair:NA:Gene denotes CK2 alpha
M_12 936-945 hunflair:NA:Gene denotes CK2 alpha
M_13 7-11 hunflair:NA:Species denotes rice
M_14 169-173 hunflair:NA:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 49-72 http://identifiers.org/oryzabase.gene/719 denotes photoperiod sensitivity
T2 103-117 http://identifiers.org/oryzabase.gene/21903 denotes protein kinase
T3 103-117 http://identifiers.org/oryzabase.gene/21900 denotes protein kinase
T4 103-117 http://identifiers.org/oryzabase.gene/20466 denotes protein kinase
T5 103-117 http://identifiers.org/oryzabase.gene/16112 denotes protein kinase
T6 174-197 http://identifiers.org/oryzabase.gene/719 denotes photoperiod sensitivity
T7 532-534 http://identifiers.org/oryzabase.gene/23136 denotes P1
T8 685-699 http://identifiers.org/oryzabase.gene/21903 denotes protein kinase
T9 685-699 http://identifiers.org/oryzabase.gene/21900 denotes protein kinase
T10 685-699 http://identifiers.org/oryzabase.gene/20466 denotes protein kinase
T11 685-699 http://identifiers.org/oryzabase.gene/16112 denotes protein kinase
T12 1129-1134 http://identifiers.org/oryzabase.gene/11165 denotes small
T219 103-117 http://identifiers.org/ricegap/LOC_Os07g04820 denotes protein kinase
T97098 103-117 http://identifiers.org/ricegap/LOC_Os06g18000 denotes protein kinase
T56106 103-117 http://identifiers.org/ricegap/LOC_Os06g13320 denotes protein kinase
T98456 103-117 http://identifiers.org/ricegap/LOC_Os01g02830 denotes protein kinase
T13817 532-534 http://identifiers.org/ricegap/LOC_Os03g19120 denotes P1
T86978 685-699 http://identifiers.org/ricegap/LOC_Os07g04820 denotes protein kinase
T54201 685-699 http://identifiers.org/ricegap/LOC_Os06g18000 denotes protein kinase
T80355 685-699 http://identifiers.org/ricegap/LOC_Os06g13320 denotes protein kinase
T73108 685-699 http://identifiers.org/ricegap/LOC_Os01g02830 denotes protein kinase
T66279 705-714 http://identifiers.org/ricegap/LOC_Os03g55389 denotes CK2 alpha
T31382 757-766 http://identifiers.org/ricegap/LOC_Os03g55389 denotes CK2 alpha
T43712 936-945 http://identifiers.org/ricegap/LOC_Os03g55389 denotes CK2 alpha
T13 1129-1134 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T19679 103-117 http://identifiers.org/rapdb.locus/Os06g0288100 denotes protein kinase
T12144 103-117 http://identifiers.org/rapdb.locus/Os06g0241100 denotes protein kinase
T75619 103-117 http://identifiers.org/rapdb.locus/Os01g0117600 denotes protein kinase
T47361 532-534 http://identifiers.org/rapdb.locus/Os03g0303500 denotes P1
T78262 685-699 http://identifiers.org/rapdb.locus/Os06g0288100 denotes protein kinase
T61388 685-699 http://identifiers.org/rapdb.locus/Os06g0241100 denotes protein kinase
T31557 685-699 http://identifiers.org/rapdb.locus/Os01g0117600 denotes protein kinase
T83152 705-714 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha
T53273 757-766 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha
T7830 936-945 http://identifiers.org/rapdb.locus/Os03g0762000 denotes CK2 alpha
T86689 1129-1134 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T3792 103-117 http://identifiers.org/uniprot/Q01KM0 denotes protein kinase
T44964 103-117 http://identifiers.org/uniprot/A1XFD8 denotes protein kinase
T68909 532-534 http://identifiers.org/uniprot/Q8S3X7 denotes P1
T67396 532-534 http://identifiers.org/uniprot/Q10MM2 denotes P1
T50577 685-699 http://identifiers.org/uniprot/Q01KM0 denotes protein kinase
T45663 685-699 http://identifiers.org/uniprot/A1XFD8 denotes protein kinase
M_0 86-121 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_1 668-703 hunflair:NA:Gene denotes alpha subunit of protein kinase CK2
M_2 0-3 hunflair:NA:Gene denotes Hd6
M_3 123-126 hunflair:NA:Gene denotes Hd6
M_4 351-354 hunflair:NA:Gene denotes Hd6
M_5 445-448 hunflair:NA:Gene denotes Hd6
M_6 498-501 hunflair:NA:Gene denotes Hd6
M_7 601-604 hunflair:NA:Gene denotes Hd6
M_8 305-311 hunflair:NA:Species denotes indica
M_9 269-277 hunflair:NA:Species denotes japonica
M_10 705-714 hunflair:NA:Gene denotes CK2 alpha
M_11 757-766 hunflair:NA:Gene denotes CK2 alpha
M_12 936-945 hunflair:NA:Gene denotes CK2 alpha
M_13 7-11 hunflair:NA:Species denotes rice
M_14 169-173 hunflair:NA:Species denotes rice

OryzaGP

Id Subject Object Predicate Lexical cue
T1 103-117 gene denotes protein kinase
T2 685-699 gene denotes protein kinase

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.
T2 123-198 Sentence denotes Hd6 is a quantitative trait locus involved in rice photoperiod sensitivity.
T3 199-509 Sentence denotes It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region.
T4 510-633 Sentence denotes Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region.
T5 634-731 Sentence denotes We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region.
T6 732-865 Sentence denotes The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional.
T7 866-972 Sentence denotes Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading.
T8 973-1159 Sentence denotes Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.
T2 123-198 Sentence denotes Hd6 is a quantitative trait locus involved in rice photoperiod sensitivity.
T3 199-509 Sentence denotes It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region.
T4 510-633 Sentence denotes Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region.
T5 634-731 Sentence denotes We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region.
T6 732-865 Sentence denotes The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional.
T7 866-972 Sentence denotes Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading.
T8 973-1159 Sentence denotes Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.
T2 123-198 Sentence denotes Hd6 is a quantitative trait locus involved in rice photoperiod sensitivity.
T3 199-509 Sentence denotes It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region.
T4 510-633 Sentence denotes Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region.
T5 634-731 Sentence denotes We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region.
T6 732-865 Sentence denotes The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional.
T7 866-972 Sentence denotes Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading.
T8 973-1159 Sentence denotes Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-122 Sentence denotes Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.
T2 123-198 Sentence denotes Hd6 is a quantitative trait locus involved in rice photoperiod sensitivity.
T3 199-509 Sentence denotes It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region.
T4 510-633 Sentence denotes Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region.
T5 634-731 Sentence denotes We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region.
T6 732-865 Sentence denotes The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional.
T7 866-972 Sentence denotes Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading.
T8 973-1159 Sentence denotes Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype.