PubMed:11416158 JSON TXT

Annnotations TAB JSON ListView MergeView

Oryza-OGER

21k_plant_trait_mention

{"project":"21k_plant_trait_mention","denotations":[{"id":"M_11","span":{"begin":7,"end":11},"obj":"hunflair:NA:Species"},{"id":"M_12","span":{"begin":169,"end":173},"obj":"hunflair:NA:Species"},{"id":"M_13","span":{"begin":0,"end":3},"obj":"hunflair:NA:Gene"},{"id":"M_14","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_15","span":{"begin":351,"end":354},"obj":"hunflair:NA:Gene"},{"id":"M_16","span":{"begin":445,"end":448},"obj":"hunflair:NA:Gene"},{"id":"M_17","span":{"begin":498,"end":501},"obj":"hunflair:NA:Gene"},{"id":"M_18","span":{"begin":601,"end":604},"obj":"hunflair:NA:Gene"},{"id":"M_19","span":{"begin":305,"end":311},"obj":"hunflair:NA:Species"},{"id":"M_20","span":{"begin":269,"end":277},"obj":"hunflair:NA:Species"},{"id":"M_21","span":{"begin":705,"end":714},"obj":"hunflair:NA:Gene"},{"id":"M_22","span":{"begin":757,"end":766},"obj":"hunflair:NA:Gene"},{"id":"M_23","span":{"begin":936,"end":945},"obj":"hunflair:NA:Gene"},{"id":"M_0","span":{"begin":145,"end":150},"obj":"WTO:0000006"},{"id":"M_1","span":{"begin":1079,"end":1084},"obj":"WTO:0000006"},{"id":"M_2","span":{"begin":693,"end":699},"obj":"funRiceGene:512"},{"id":"M_3","span":{"begin":973,"end":990},"obj":"funRiceGene:79, xzyao:16212"},{"id":"M_4","span":{"begin":917,"end":932},"obj":"xzyao:14672"},{"id":"M_5","span":{"begin":685,"end":699},"obj":"funRiceGene:313, xzyao:7646"},{"id":"M_6","span":{"begin":169,"end":185},"obj":"xzyao:13298"},{"id":"M_7","span":{"begin":174,"end":185},"obj":"WTO:0000097"},{"id":"M_8","span":{"begin":693,"end":699},"obj":"funRiceGene:139"},{"id":"M_9","span":{"begin":86,"end":121},"obj":"hunflair:NA:Gene"},{"id":"M_10","span":{"begin":668,"end":703},"obj":"hunflair:NA:Gene"},{"id":"M_24","span":{"begin":7,"end":11},"obj":"pubtator:4530:Species"},{"id":"M_25","span":{"begin":169,"end":173},"obj":"pubtator:4530:Species"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

OryzaGP_2021_v2

{"project":"OryzaGP_2021_v2","denotations":[{"id":"T1","span":{"begin":532,"end":534},"obj":"http://identifiers.org/oryzabase.gene/23136"},{"id":"T2","span":{"begin":705,"end":714},"obj":"http://identifiers.org/oryzabase.gene/529"},{"id":"T3","span":{"begin":757,"end":766},"obj":"http://identifiers.org/oryzabase.gene/529"},{"id":"T4","span":{"begin":936,"end":945},"obj":"http://identifiers.org/oryzabase.gene/529"},{"id":"T29899","span":{"begin":532,"end":534},"obj":"http://identifiers.org/rapdb.locus/Os03g0303500"},{"id":"T12333","span":{"begin":705,"end":714},"obj":"http://identifiers.org/rapdb.locus/Os03g0762000"},{"id":"T45493","span":{"begin":757,"end":766},"obj":"http://identifiers.org/rapdb.locus/Os03g0762000"},{"id":"T31237","span":{"begin":936,"end":945},"obj":"http://identifiers.org/rapdb.locus/Os03g0762000"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

OryzaGP_2022

{"project":"OryzaGP_2022","denotations":[{"id":"T1","span":{"begin":49,"end":72},"obj":"http://identifiers.org/oryzabase.gene/719"},{"id":"T2","span":{"begin":103,"end":117},"obj":"http://identifiers.org/oryzabase.gene/21903"},{"id":"T3","span":{"begin":103,"end":117},"obj":"http://identifiers.org/oryzabase.gene/21900"},{"id":"T4","span":{"begin":103,"end":117},"obj":"http://identifiers.org/oryzabase.gene/20466"},{"id":"T5","span":{"begin":174,"end":197},"obj":"http://identifiers.org/oryzabase.gene/719"},{"id":"T6","span":{"begin":685,"end":699},"obj":"http://identifiers.org/oryzabase.gene/21903"},{"id":"T7","span":{"begin":685,"end":699},"obj":"http://identifiers.org/oryzabase.gene/21900"},{"id":"T8","span":{"begin":685,"end":699},"obj":"http://identifiers.org/oryzabase.gene/20466"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

pqqtest_sentence

PMID_GLOBAL

{"project":"PMID_GLOBAL","denotations":[{"id":"T1","span":{"begin":61,"end":72},"obj":"DiseaseOrPhenotypicFeature"},{"id":"T2","span":{"begin":186,"end":197},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"0000605"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"0000605"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

OryzaGP_2021_FLAIR

{"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_0","span":{"begin":86,"end":121},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":668,"end":703},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":0,"end":3},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":351,"end":354},"obj":"hunflair:NA:Gene"},{"id":"M_5","span":{"begin":445,"end":448},"obj":"hunflair:NA:Gene"},{"id":"M_6","span":{"begin":498,"end":501},"obj":"hunflair:NA:Gene"},{"id":"M_7","span":{"begin":601,"end":604},"obj":"hunflair:NA:Gene"},{"id":"M_8","span":{"begin":305,"end":311},"obj":"hunflair:NA:Species"},{"id":"M_9","span":{"begin":269,"end":277},"obj":"hunflair:NA:Species"},{"id":"M_10","span":{"begin":705,"end":714},"obj":"hunflair:NA:Gene"},{"id":"M_11","span":{"begin":757,"end":766},"obj":"hunflair:NA:Gene"},{"id":"M_12","span":{"begin":936,"end":945},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":7,"end":11},"obj":"hunflair:NA:Species"},{"id":"M_14","span":{"begin":169,"end":173},"obj":"hunflair:NA:Species"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

OryzaGP_2021

OryzaGP

{"project":"OryzaGP","denotations":[{"id":"T1","span":{"begin":103,"end":117},"obj":"gene"},{"id":"T2","span":{"begin":685,"end":699},"obj":"gene"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}

Oryza_sentences

{"project":"Oryza_sentences","blocks":[{"id":"T1","span":{"begin":0,"end":122},"obj":"Sentence"},{"id":"T2","span":{"begin":123,"end":198},"obj":"Sentence"},{"id":"T3","span":{"begin":199,"end":509},"obj":"Sentence"},{"id":"T4","span":{"begin":510,"end":633},"obj":"Sentence"},{"id":"T5","span":{"begin":634,"end":731},"obj":"Sentence"},{"id":"T6","span":{"begin":732,"end":865},"obj":"Sentence"},{"id":"T7","span":{"begin":866,"end":972},"obj":"Sentence"},{"id":"T8","span":{"begin":973,"end":1159},"obj":"Sentence"}],"text":"Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.\nHd6 is a quantitative trait locus involved in rice photoperiod sensitivity. It was detected in backcross progeny derived from a cross between the japonica variety Nipponbare and the indica variety Kasalath. To isolate a gene at Hd6, we used a large segregating population for the high-resolution and fine-scale mapping of Hd6 and constructed genomic clone contigs around the Hd6 region. Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. We identified a gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. Map-based cloning with advanced backcross progeny enabled us to identify a gene underlying a quantitative trait locus even though it exhibited a relatively small effect on the phenotype."}