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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 37-59 protein denotes microbial lipoproteins
T2 68-87 protein denotes toll-like receptors
T3 191-205 protein denotes interleukin-12
T4 207-212 protein denotes IL-12
T5 308-313 protein denotes IL-12
T6 328-339 cell_type denotes macrophages
T7 419-441 protein denotes microbial lipoproteins
T8 468-473 protein denotes IL-12
T9 494-505 cell_type denotes macrophages
T10 541-560 protein denotes Toll-like receptors
T11 562-566 protein denotes TLRs
T12 642-663 protein denotes nitric oxide synthase
T13 747-751 protein denotes TLRs
T14 755-777 protein denotes microbial lipoproteins

genia-medco-coref

Id Subject Object Predicate Lexical cue
C20 37-59 NP denotes microbial lipoproteins
C21 68-87 NP denotes toll-like receptors
C1 191-213 NP denotes interleukin-12 (IL-12)
C5 173-213 NP denotes the production of interleukin-12 (IL-12)
C2 215-255 NP denotes a key signal of the innate immune system
C3 282-295 NP denotes the molecules
C4 296-300 NP denotes that
C6 308-324 NP denotes IL-12 production
C11 328-339 NP denotes macrophages
C7 344-358 NP denotes the mechanisms
C8 362-367 NP denotes which
C9 368-372 NP denotes they
C18 419-441 NP denotes microbial lipoproteins
C10 468-484 NP denotes IL-12 production
C12 488-505 NP denotes human macrophages
C13 541-567 NP denotes Toll-like receptors (TLRs)
C15 686-698 NP denotes nitric oxide
C16 700-731 NP denotes a powerful microbicidal pathway
C17 747-751 NP denotes TLRs
C19 755-777 NP denotes microbial lipoproteins
R1 C2 C1 coref-appos a key signal of the innate immune system,interleukin-12 (IL-12)
R2 C4 C3 coref-relat that,the molecules
R3 C6 C5 coref-ident IL-12 production,the production of interleukin-12 (IL-12)
R4 C8 C7 coref-relat which,the mechanisms
R5 C9 C3 coref-pron they,the molecules
R6 C18 C20 coref-ident microbial lipoproteins,microbial lipoproteins
R7 C10 C6 coref-ident IL-12 production,IL-12 production
R8 C12 C11 coref-ident human macrophages,macrophages
R9 C13 C21 coref-ident Toll-like receptors (TLRs),toll-like receptors
R10 C16 C15 coref-appos a powerful microbicidal pathway,nitric oxide
R11 C17 C13 coref-ident TLRs,Toll-like receptors (TLRs)
R12 C19 C18 coref-ident microbial lipoproteins,microbial lipoproteins

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-88 Sentence denotes Host defense mechanisms triggered by microbial lipoproteins through toll-like receptors.
S2 89-256 Sentence denotes The generation of cell-mediated immunity against many infectious pathogens involves the production of interleukin-12 (IL-12), a key signal of the innate immune system.
S3 257-396 Sentence denotes Yet, for many pathogens, the molecules that induce IL-12 production by macrophages and the mechanisms by which they do so remain undefined.
S4 397-568 Sentence denotes Here it is shown that microbial lipoproteins are potent stimulators of IL-12 production by human macrophages, and that induction is mediated by Toll-like receptors (TLRs).
S5 569-732 Sentence denotes Several lipoproteins stimulated TLR-dependent transcription of inducible nitric oxide synthase and the production of nitric oxide, a powerful microbicidal pathway.
S6 733-846 Sentence denotes Activation of TLRs by microbial lipoproteins may initiate innate defense mechanisms against infectious pathogens.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 37-59 protein_family_or_group denotes microbial lipoproteins
T2 68-87 protein_family_or_group denotes toll-like receptors
T3 143-163 mono_cell denotes infectious pathogens
T4 191-205 protein_molecule denotes interleukin-12
T5 207-212 protein_molecule denotes IL-12
T6 235-255 body_part denotes innate immune system
T7 308-313 protein_molecule denotes IL-12
T8 328-339 cell_type denotes macrophages
T9 419-441 protein_family_or_group denotes microbial lipoproteins
T10 468-473 protein_molecule denotes IL-12
T11 494-505 cell_type denotes macrophages
T12 541-560 protein_family_or_group denotes Toll-like receptors
T13 562-566 protein_family_or_group denotes TLRs
T14 601-628 other_name denotes TLR-dependent transcription
T15 642-663 protein_molecule denotes nitric oxide synthase
T16 686-698 inorganic denotes nitric oxide
T17 711-731 other_name denotes microbicidal pathway
T18 747-751 protein_family_or_group denotes TLRs
T19 755-777 protein_family_or_group denotes microbial lipoproteins
T20 825-845 mono_cell denotes infectious pathogens

bionlp-st-gro-2013-training

Id Subject Object Predicate Lexical cue
T2 37-46 Microorganism denotes microbial
T3 47-59 Protein denotes lipoproteins
T4 68-87 Protein denotes toll-like receptors
T5 107-111 Cell denotes cell
T8 191-205 Protein denotes interleukin-12
T9 207-212 Protein denotes IL-12
T11 308-313 Protein denotes IL-12
T13 328-339 Cell denotes macrophages
T14 419-428 Microorganism denotes microbial
T15 429-441 Protein denotes lipoproteins
T17 468-473 Protein denotes IL-12
T19 488-493 Eukaryote denotes human
T20 494-505 Cell denotes macrophages
T23 541-560 Protein denotes Toll-like receptors
T24 562-566 Protein denotes TLRs
T25 577-589 Protein denotes lipoproteins
T27 601-604 Protein denotes TLR
T32 686-698 Chemical denotes nitric oxide
T35 747-751 Protein denotes TLRs
T36 755-764 Microorganism denotes microbial
T37 765-777 Protein denotes lipoproteins
T29 642-663 Enzyme denotes nitric oxide synthase
E1 24-33 PositiveRegulation denotes triggered
E2 112-120 RegulatoryProcess denotes mediated
E3 177-187 ProteinBiosynthesis denotes production
E4 301-307 Increase denotes induce
E5 314-324 ProteinBiosynthesis denotes production
E6 474-484 ProteinBiosynthesis denotes production
E7 516-525 Increase denotes induction
E8 529-537 RegulatoryProcess denotes mediated
E9 590-600 Increase denotes stimulated
E10 615-628 Transcription denotes transcription
E11 672-682 Producing denotes production
E12 733-743 PositiveRegulation denotes Activation
E13 782-790 PositiveRegulation denotes initiate
E14 791-816 ResponseProcess denotes innate defense mechanisms
E15 0-23 ResponseProcess denotes Host defense mechanisms
E16 121-129 CellularProcess denotes immunity
E17 453-464 Increase denotes stimulators
E18 711-731 Pathway denotes microbicidal pathway
E19 590-600 Increase denotes stimulated
R1 T3 T2 locatedIn lipoproteins,microbial
R3 T15 T14 locatedIn lipoproteins,microbial
R4 T20 T19 fromSpecies macrophages,human
R5 T37 T36 locatedIn lipoproteins,microbial
R7 T3 E1 hasAgent lipoproteins,triggered
R8 E15 E1 hasPatient Host defense mechanisms,triggered
R10 T5 E2 hasAgent cell,mediated
R11 E16 E2 hasPatient immunity,mediated
R12 T8 E3 hasPatient interleukin-12,production
R13 E5 E4 hasPatient production,induce
R14 T13 E5 hasAgent macrophages,production
R15 T11 E5 hasPatient IL-12,production
R16 T20 E6 hasAgent macrophages,production
R17 T17 E6 hasPatient IL-12,production
R18 T23 E8 hasAgent Toll-like receptors,mediated
R19 E7 E8 hasPatient induction,mediated
R20 T25 E9 hasAgent lipoproteins,stimulated
R21 E10 E9 hasPatient transcription,stimulated
R22 T29 E10 hasPatient nitric oxide synthase,transcription
R23 T32 E11 hasPatient nitric oxide,production
R24 T37 E12 hasAgent lipoproteins,Activation
R25 T35 E12 hasPatient TLRs,Activation
R26 E12 E13 hasAgent Activation,initiate
R27 E14 E13 hasPatient innate defense mechanisms,initiate
R28 T15 E17 hasAgent lipoproteins,stimulators
R29 E6 E17 hasPatient production,stimulators
R30 T25 E19 hasAgent lipoproteins,stimulated
R31 E11 E19 hasPatient production,stimulated