PubMed:10202178 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10202178","sourcedb":"PubMed","sourceid":"10202178","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10202178","text":"Differential induction of interferon (IFN)-inducible protein 10 following differentiation of a monocyte, macrophage cell lineage is related to the changes of nuclear proteins bound to IFN stimulus response element and kappaB sites.\nWe examined chemokine gene expression following the differentiation of a monocyte, macrophage cell lineage. The human monoblastic cell line, U937 was differentiated to macrophages by the treatment with either phorbol 12-myristate 13-acetate (PMA), retinoic acid (RA), or vitamin D3 (VitD3). The gene expression of interferon (IFN)-inducible protein 10 (IP-10) (a CXC chemokine) was markedly augmented by the IFNgamma treatment in PMA- or RA-differentiated U937 cells, but only marginally in undifferentiated or VitD3-treated cells. In contrast, another inducible gene expression of monocyte chemotactic protein-1 (a CC chemokine) and the activation of the transcriptional factor (FcRFgamma) bound to the gamma response region were similarly or less abundantly induced by IFNgamma treatment in PMA- or RA-differentiated U937 cells, indicating that increased IP-10 mRNA induction was not due to the augmented ability of the cells to respond to the presence of IFNgamma. Increased expression of IFNgamma-induced IP-10 mRNA following the differentiation of U937 cells was mediated largely by augmented transcriptional activity of the gene and was related to differentiation-dependent changes of the proteins bound to IFN stimulus response element (ISRE) and kB sites, suggesting that these nuclear proteins may determine the IP-10 mRNA inducibility by IFNgamma.","tracks":[{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":74,"end":128},"obj":"NP"},{"id":"C2","span":{"begin":184,"end":230},"obj":"NP"},{"id":"C3","span":{"begin":280,"end":338},"obj":"NP"},{"id":"C4","span":{"begin":340,"end":371},"obj":"NP"},{"id":"C5","span":{"begin":373,"end":377},"obj":"NP"},{"id":"C6","span":{"begin":636,"end":698},"obj":"NP"},{"id":"C7","span":{"begin":1003,"end":1061},"obj":"NP"},{"id":"C8","span":{"begin":1190,"end":1198},"obj":"NP"},{"id":"C9","span":{"begin":1285,"end":1295},"obj":"NP"},{"id":"C10","span":{"begin":1445,"end":1494},"obj":"NP"},{"id":"C11","span":{"begin":1580,"end":1588},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-ident","subj":"C3","obj":"C1"},{"id":"R2","pred":"coref-appos","subj":"C5","obj":"C4"},{"id":"R3","pred":"coref-ident","subj":"C7","obj":"C6"},{"id":"R4","pred":"coref-ident","subj":"C9","obj":"C4"},{"id":"R5","pred":"coref-ident","subj":"C10","obj":"C2"},{"id":"R6","pred":"coref-ident","subj":"C11","obj":"C8"}],"attributes":[{"subj":"C1","pred":"source","obj":"genia-medco-coref"},{"subj":"C2","pred":"source","obj":"genia-medco-coref"},{"subj":"C3","pred":"source","obj":"genia-medco-coref"},{"subj":"C4","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C6","pred":"source","obj":"genia-medco-coref"},{"subj":"C7","pred":"source","obj":"genia-medco-coref"},{"subj":"C8","pred":"source","obj":"genia-medco-coref"},{"subj":"C9","pred":"source","obj":"genia-medco-coref"},{"subj":"C10","pred":"source","obj":"genia-medco-coref"},{"subj":"C11","pred":"source","obj":"genia-medco-coref"}]},{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":26,"end":63},"obj":"protein"},{"id":"T2","span":{"begin":95,"end":103},"obj":"cell_type"},{"id":"T3","span":{"begin":105,"end":120},"obj":"cell_type"},{"id":"T4","span":{"begin":158,"end":174},"obj":"protein"},{"id":"T5","span":{"begin":184,"end":213},"obj":"DNA"},{"id":"T6","span":{"begin":218,"end":230},"obj":"DNA"},{"id":"T7","span":{"begin":244,"end":253},"obj":"protein"},{"id":"T8","span":{"begin":305,"end":313},"obj":"cell_type"},{"id":"T9","span":{"begin":315,"end":338},"obj":"cell_line"},{"id":"T10","span":{"begin":344,"end":371},"obj":"cell_line"},{"id":"T11","span":{"begin":373,"end":377},"obj":"cell_line"},{"id":"T12","span":{"begin":400,"end":411},"obj":"cell_type"},{"id":"T13","span":{"begin":546,"end":583},"obj":"protein"},{"id":"T14","span":{"begin":585,"end":590},"obj":"protein"},{"id":"T15","span":{"begin":595,"end":608},"obj":"protein"},{"id":"T16","span":{"begin":640,"end":648},"obj":"protein"},{"id":"T17","span":{"begin":688,"end":698},"obj":"cell_line"},{"id":"T18","span":{"begin":743,"end":762},"obj":"cell_line"},{"id":"T19","span":{"begin":814,"end":844},"obj":"protein"},{"id":"T20","span":{"begin":848,"end":860},"obj":"protein"},{"id":"T21","span":{"begin":888,"end":910},"obj":"protein"},{"id":"T22","span":{"begin":912,"end":921},"obj":"protein"},{"id":"T23","span":{"begin":936,"end":957},"obj":"DNA"},{"id":"T24","span":{"begin":1003,"end":1011},"obj":"protein"},{"id":"T25","span":{"begin":1051,"end":1061},"obj":"cell_line"},{"id":"T26","span":{"begin":1089,"end":1099},"obj":"RNA"},{"id":"T27","span":{"begin":1190,"end":1198},"obj":"protein"},{"id":"T28","span":{"begin":1224,"end":1232},"obj":"protein"},{"id":"T29","span":{"begin":1241,"end":1251},"obj":"RNA"},{"id":"T30","span":{"begin":1285,"end":1295},"obj":"cell_line"},{"id":"T31","span":{"begin":1445,"end":1481},"obj":"DNA"},{"id":"T32","span":{"begin":1486,"end":1494},"obj":"DNA"},{"id":"T33","span":{"begin":1518,"end":1534},"obj":"protein"},{"id":"T34","span":{"begin":1553,"end":1563},"obj":"RNA"},{"id":"T35","span":{"begin":1580,"end":1588},"obj":"protein"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"},{"subj":"T24","pred":"source","obj":"jnlpba-st-training"},{"subj":"T25","pred":"source","obj":"jnlpba-st-training"},{"subj":"T26","pred":"source","obj":"jnlpba-st-training"},{"subj":"T27","pred":"source","obj":"jnlpba-st-training"},{"subj":"T28","pred":"source","obj":"jnlpba-st-training"},{"subj":"T29","pred":"source","obj":"jnlpba-st-training"},{"subj":"T30","pred":"source","obj":"jnlpba-st-training"},{"subj":"T31","pred":"source","obj":"jnlpba-st-training"},{"subj":"T32","pred":"source","obj":"jnlpba-st-training"},{"subj":"T33","pred":"source","obj":"jnlpba-st-training"},{"subj":"T34","pred":"source","obj":"jnlpba-st-training"},{"subj":"T35","pred":"source","obj":"jnlpba-st-training"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":231},"obj":"Sentence"},{"id":"S2","span":{"begin":232,"end":339},"obj":"Sentence"},{"id":"S3","span":{"begin":340,"end":522},"obj":"Sentence"},{"id":"S4","span":{"begin":523,"end":763},"obj":"Sentence"},{"id":"S5","span":{"begin":764,"end":1199},"obj":"Sentence"},{"id":"S6","span":{"begin":1200,"end":1589},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":22},"obj":"other_name"},{"id":"T2","span":{"begin":26,"end":63},"obj":"protein_molecule"},{"id":"T3","span":{"begin":95,"end":103},"obj":"cell_type"},{"id":"T4","span":{"begin":105,"end":120},"obj":"cell_type"},{"id":"T5","span":{"begin":158,"end":174},"obj":"protein_family_or_group"},{"id":"T6","span":{"begin":184,"end":213},"obj":"DNA_domain_or_region"},{"id":"T7","span":{"begin":218,"end":224},"obj":"DNA_molecule"},{"id":"T8","span":{"begin":244,"end":253},"obj":"protein_family_or_group"},{"id":"T9","span":{"begin":305,"end":313},"obj":"cell_type"},{"id":"T10","span":{"begin":315,"end":325},"obj":"cell_type"},{"id":"T11","span":{"begin":344,"end":371},"obj":"cell_line"},{"id":"T12","span":{"begin":373,"end":377},"obj":"cell_line"},{"id":"T13","span":{"begin":400,"end":411},"obj":"cell_type"},{"id":"T14","span":{"begin":441,"end":472},"obj":"other_organic_compound"},{"id":"T15","span":{"begin":474,"end":477},"obj":"other_organic_compound"},{"id":"T16","span":{"begin":480,"end":493},"obj":"other_organic_compound"},{"id":"T17","span":{"begin":495,"end":497},"obj":"other_organic_compound"},{"id":"T18","span":{"begin":503,"end":515},"obj":"lipid"},{"id":"T19","span":{"begin":515,"end":520},"obj":"lipid"},{"id":"T20","span":{"begin":546,"end":583},"obj":"protein_molecule"},{"id":"T21","span":{"begin":585,"end":590},"obj":"protein_molecule"},{"id":"T22","span":{"begin":595,"end":608},"obj":"protein_family_or_group"},{"id":"T23","span":{"begin":640,"end":648},"obj":"protein_molecule"},{"id":"T24","span":{"begin":662,"end":665},"obj":"other_organic_compound"},{"id":"T25","span":{"begin":670,"end":672},"obj":"other_organic_compound"},{"id":"T26","span":{"begin":688,"end":698},"obj":"cell_line"},{"id":"T27","span":{"begin":743,"end":748},"obj":"lipid"},{"id":"T28","span":{"begin":814,"end":844},"obj":"protein_molecule"},{"id":"T29","span":{"begin":848,"end":860},"obj":"protein_family_or_group"},{"id":"T30","span":{"begin":888,"end":910},"obj":"protein_family_or_group"},{"id":"T31","span":{"begin":912,"end":921},"obj":"protein_molecule"},{"id":"T32","span":{"begin":936,"end":957},"obj":"DNA_domain_or_region"},{"id":"T33","span":{"begin":1003,"end":1011},"obj":"protein_molecule"},{"id":"T34","span":{"begin":1025,"end":1028},"obj":"other_organic_compound"},{"id":"T35","span":{"begin":1033,"end":1035},"obj":"other_organic_compound"},{"id":"T36","span":{"begin":1051,"end":1061},"obj":"cell_line"},{"id":"T37","span":{"begin":1089,"end":1094},"obj":"protein_molecule"},{"id":"T38","span":{"begin":1190,"end":1198},"obj":"protein_molecule"},{"id":"T39","span":{"begin":1224,"end":1232},"obj":"protein_molecule"},{"id":"T40","span":{"begin":1241,"end":1246},"obj":"protein_molecule"},{"id":"T41","span":{"begin":1285,"end":1295},"obj":"cell_line"},{"id":"T42","span":{"begin":1445,"end":1476},"obj":"DNA_domain_or_region"},{"id":"T43","span":{"begin":1476,"end":1480},"obj":"DNA_domain_or_region"},{"id":"T44","span":{"begin":1486,"end":1494},"obj":"DNA_domain_or_region"},{"id":"T45","span":{"begin":1518,"end":1534},"obj":"protein_family_or_group"},{"id":"T46","span":{"begin":1553,"end":1558},"obj":"protein_molecule"},{"id":"T47","span":{"begin":1580,"end":1588},"obj":"protein_molecule"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"},{"subj":"T33","pred":"source","obj":"GENIAcorpus"},{"subj":"T34","pred":"source","obj":"GENIAcorpus"},{"subj":"T35","pred":"source","obj":"GENIAcorpus"},{"subj":"T36","pred":"source","obj":"GENIAcorpus"},{"subj":"T37","pred":"source","obj":"GENIAcorpus"},{"subj":"T38","pred":"source","obj":"GENIAcorpus"},{"subj":"T39","pred":"source","obj":"GENIAcorpus"},{"subj":"T40","pred":"source","obj":"GENIAcorpus"},{"subj":"T41","pred":"source","obj":"GENIAcorpus"},{"subj":"T42","pred":"source","obj":"GENIAcorpus"},{"subj":"T43","pred":"source","obj":"GENIAcorpus"},{"subj":"T44","pred":"source","obj":"GENIAcorpus"},{"subj":"T45","pred":"source","obj":"GENIAcorpus"},{"subj":"T46","pred":"source","obj":"GENIAcorpus"},{"subj":"T47","pred":"source","obj":"GENIAcorpus"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"genia-medco-coref","color":"#eca893","default":true},{"id":"jnlpba-st-training","color":"#9398ec"},{"id":"pubmed-sentences-benchmark","color":"#b2ec93"},{"id":"GENIAcorpus","color":"#ec93cc"}]}]}}