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PMC:7755033 / 29742-30389 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
508 129-132 Gene denotes PDB Gene:5131
509 109-114 Gene denotes spike Gene:43740568
510 192-195 Gene denotes PDB Gene:5131
511 100-108 Species denotes SARS-CoV Tax:694009
512 166-176 Species denotes SARS-CoV-2 Tax:2697049
513 211-222 Chemical denotes withanolide MESH:D054358

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T255 0-7 Sentence denotes 2.11.2.
T256 9-69 Sentence denotes Ligand and receptor molecular dynamics (LARMD) online server
T257 70-136 Sentence denotes The MD simulation analyses of SARS-CoV spike glycoprotein (PDB ID:
T258 137-199 Sentence denotes 5WRG) with withanolide B and SARS-CoV-2 main protease (PDB ID:
T259 200-388 Sentence denotes 6LU7) with withanolide A were performed using Ligand and Receptor Molecular Dynamics (LARMD, http://chemyang.ccnu.edu.cn/ccb/server/LARMD/;http://agroda.gzu.edu.cn:9999/ccb/server/LARMD/).
T260 389-485 Sentence denotes It is an online bioinformatics tool to investigate and visualize ligand-driven protein dynamics.
T261 486-647 Sentence denotes LARMD comprises of three computational modules out of which Int_mod, which aids in the investigation of protein fluctuation, was implemented (Yang et al., 2019).