PMC:7755033 / 29742-30389 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7755033","sourcedb":"PMC","sourceid":"7755033","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7755033","text":"2.11.2. Ligand and receptor molecular dynamics (LARMD) online server\nThe MD simulation analyses of SARS-CoV spike glycoprotein (PDB ID: 5WRG) with withanolide B and SARS-CoV-2 main protease (PDB ID: 6LU7) with withanolide A were performed using Ligand and Receptor Molecular Dynamics (LARMD, http://chemyang.ccnu.edu.cn/ccb/server/LARMD/;http://agroda.gzu.edu.cn:9999/ccb/server/LARMD/). It is an online bioinformatics tool to investigate and visualize ligand-driven protein dynamics. LARMD comprises of three computational modules out of which Int_mod, which aids in the investigation of protein fluctuation, was implemented (Yang et al., 2019).","divisions":[{"label":"label","span":{"begin":0,"end":7}},{"label":"title","span":{"begin":9,"end":69}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"508","span":{"begin":129,"end":132},"obj":"Gene"},{"id":"509","span":{"begin":109,"end":114},"obj":"Gene"},{"id":"510","span":{"begin":192,"end":195},"obj":"Gene"},{"id":"511","span":{"begin":100,"end":108},"obj":"Species"},{"id":"512","span":{"begin":166,"end":176},"obj":"Species"},{"id":"513","span":{"begin":211,"end":222},"obj":"Chemical"}],"attributes":[{"id":"A508","pred":"tao:has_database_id","subj":"508","obj":"Gene:5131"},{"id":"A509","pred":"tao:has_database_id","subj":"509","obj":"Gene:43740568"},{"id":"A510","pred":"tao:has_database_id","subj":"510","obj":"Gene:5131"},{"id":"A511","pred":"tao:has_database_id","subj":"511","obj":"Tax:694009"},{"id":"A512","pred":"tao:has_database_id","subj":"512","obj":"Tax:2697049"},{"id":"A513","pred":"tao:has_database_id","subj":"513","obj":"MESH:D054358"},{"subj":"508","pred":"source","obj":"LitCovid-PubTator"},{"subj":"509","pred":"source","obj":"LitCovid-PubTator"},{"subj":"510","pred":"source","obj":"LitCovid-PubTator"},{"subj":"511","pred":"source","obj":"LitCovid-PubTator"},{"subj":"512","pred":"source","obj":"LitCovid-PubTator"},{"subj":"513","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T255","span":{"begin":0,"end":7},"obj":"Sentence"},{"id":"T256","span":{"begin":9,"end":69},"obj":"Sentence"},{"id":"T257","span":{"begin":70,"end":136},"obj":"Sentence"},{"id":"T258","span":{"begin":137,"end":199},"obj":"Sentence"},{"id":"T259","span":{"begin":200,"end":388},"obj":"Sentence"},{"id":"T260","span":{"begin":389,"end":485},"obj":"Sentence"},{"id":"T261","span":{"begin":486,"end":647},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T255","pred":"source","obj":"LitCovid-sentences"},{"subj":"T256","pred":"source","obj":"LitCovid-sentences"},{"subj":"T257","pred":"source","obj":"LitCovid-sentences"},{"subj":"T258","pred":"source","obj":"LitCovid-sentences"},{"subj":"T259","pred":"source","obj":"LitCovid-sentences"},{"subj":"T260","pred":"source","obj":"LitCovid-sentences"},{"subj":"T261","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93b3ec","default":true},{"id":"LitCovid-sentences","color":"#cdec93"}]}]}}