PMC:7647877 / 58351-59846
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T626 | 10-14 | Body_part | denotes | Milk | http://purl.org/sig/ont/fma/fma62100 |
| T627 | 33-38 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T628 | 290-307 | Body_part | denotes | epithelial tissue | http://purl.org/sig/ont/fma/fma9639 |
| T629 | 333-338 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T630 | 344-347 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T631 | 379-384 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T632 | 389-392 | Body_part | denotes | IgA | http://purl.org/sig/ont/fma/fma62874 |
| T633 | 395-400 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T634 | 406-416 | Body_part | denotes | intestinal | http://purl.org/sig/ont/fma/fma7199 |
| T635 | 417-424 | Body_part | denotes | tissues | http://purl.org/sig/ont/fma/fma9637 |
| T636 | 440-443 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T637 | 562-576 | Body_part | denotes | gap-junctional | http://purl.org/sig/ont/fma/fma67423 |
| T638 | 624-632 | Body_part | denotes | NK cells | http://purl.org/sig/ont/fma/fma63147 |
| T639 | 627-632 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T640 | 681-692 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T641 | 758-762 | Body_part | denotes | IL-2 | http://purl.org/sig/ont/fma/fma84051 |
| T642 | 758-760 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T643 | 817-828 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T644 | 885-896 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T645 | 970-979 | Body_part | denotes | Th2 cells | http://purl.org/sig/ont/fma/fma84385 |
| T646 | 974-979 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T647 | 1022-1027 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T648 | 1033-1051 | Body_part | denotes | regulatory T cells | http://purl.org/sig/ont/fma/fma84070 |
| T649 | 1046-1051 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T650 | 1121-1126 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T651 | 1171-1180 | Body_part | denotes | Th2 cells | http://purl.org/sig/ont/fma/fma84385 |
| T652 | 1175-1180 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T653 | 1199-1207 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T654 | 1245-1250 | Body_part | denotes | IL-12 | http://purl.org/sig/ont/fma/fma86579 |
| T655 | 1245-1247 | Body_part | denotes | IL | http://purl.org/sig/ont/fma/fma86578 |
| T656 | 1283-1292 | Body_part | denotes | Th1 cells | http://purl.org/sig/ont/fma/fma84382 |
| T657 | 1287-1292 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T658 | 1317-1322 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T659 | 1352-1360 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T660 | 1398-1402 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T661 | 1412-1415 | Body_part | denotes | IgA | http://purl.org/sig/ont/fma/fma62874 |
| T662 | 1416-1424 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T663 | 1448-1462 | Body_part | denotes | polysaccharide | http://purl.org/sig/ont/fma/fma82746 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T136 | 10-14 | Body_part | denotes | Milk | http://purl.obolibrary.org/obo/UBERON_0001913 |
| T137 | 33-38 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T138 | 301-307 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T269 | 914-926 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T711 | 8-9 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T712 | 33-38 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T713 | 33-38 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T714 | 45-49 | http://purl.obolibrary.org/obo/NCBITaxon_117565 | denotes | fish |
| T715 | 290-307 | http://purl.obolibrary.org/obo/UBERON_0000483 | denotes | epithelial tissue |
| T716 | 331-338 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T717 | 344-347 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T718 | 344-347 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T719 | 344-347 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T720 | 377-384 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T721 | 395-400 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T722 | 406-416 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| T723 | 406-416 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestinal |
| T724 | 440-443 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T725 | 440-443 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T726 | 440-443 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T727 | 540-548 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T728 | 566-576 | http://purl.obolibrary.org/obo/UBERON_0007651 | denotes | junctional |
| T729 | 624-632 | http://purl.obolibrary.org/obo/CL_0000623 | denotes | NK cells |
| T730 | 638-648 | http://purl.obolibrary.org/obo/CL_0000234 | denotes | phagocytic |
| T731 | 669-677 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T732 | 758-762 | http://purl.obolibrary.org/obo/PR_000001379 | denotes | IL-2 |
| T733 | 842-852 | http://purl.obolibrary.org/obo/CL_0000234 | denotes | phagocytic |
| T734 | 873-881 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T735 | 897-906 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T736 | 974-979 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T737 | 1014-1027 | http://purl.obolibrary.org/obo/CL_0000898 | denotes | naïve T cells |
| T738 | 1033-1051 | http://purl.obolibrary.org/obo/CL_0000815 | denotes | regulatory T cells |
| T739 | 1059-1060 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T740 | 1119-1126 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T741 | 1175-1180 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T742 | 1287-1292 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T743 | 1315-1322 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T744 | 1396-1402 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T91853 | 0-9 | Chemical | denotes | Vitamin A | http://purl.obolibrary.org/obo/CHEBI_17336 |
| T144 | 0-7 | Chemical | denotes | Vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T97722 | 309-322 | Chemical | denotes | retinoic acid | http://purl.obolibrary.org/obo/CHEBI_26536 |
| T31821 | 318-322 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T98177 | 453-464 | Chemical | denotes | carotenoids | http://purl.obolibrary.org/obo/CHEBI_23044 |
| T24485 | 521-524 | Chemical | denotes | ROS | http://purl.obolibrary.org/obo/CHEBI_26523 |
| T72325 | 758-760 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T44807 | 1162-1164 | Chemical | denotes | Th | http://purl.obolibrary.org/obo/CHEBI_33385 |
| T66751 | 1245-1247 | Chemical | denotes | IL | http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072 |
| T11555 | 1374-1381 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T22298 | 1448-1462 | Chemical | denotes | polysaccharide | http://purl.obolibrary.org/obo/CHEBI_18154 |
| T60345 | 1463-1471 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T266 | 653-668 | http://purl.obolibrary.org/obo/GO_0045730 | denotes | oxidative burst |
| T267 | 707-721 | http://purl.obolibrary.org/obo/GO_0072647 | denotes | IFN production |
| T268 | 857-872 | http://purl.obolibrary.org/obo/GO_0045730 | denotes | oxidative burst |
| T269 | 914-926 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T360 | 0-424 | Sentence | denotes | Vitamin A Milk and cheese, eggs, liver, oily fish, fortified cereals, dark orange or green vegetables (e.g., carrots, sweet potatoes, pumpkin, squash, kale, spinach, broccoli), orange fruits (e.g., apricots, peaches, papaya, mango, cantaloupe melon), tomato juice Normal differentiation of epithelial tissue; retinoic acid ↑ T and B cells with gut-homing specificity and array T cells and IgA + cells into intestinal tissues |
| T361 | 425-590 | Sentence | denotes | Supporting the gut barrier; carotenoids; ↑immunoregulatory actions including ↓ toxic effects of ROS and regulating membrane fluidity and gap-junctional communication |
| T362 | 591-692 | Sentence | denotes | Regulates number and function of NK cells,↑ to phagocytic and oxidative burst activity of macrophages |
| T363 | 693-721 | Sentence | denotes | Downregulates IFN production |
| T364 | 722-926 | Sentence | denotes | Helps to regulate the production of IL-2 and the pro-inflammatory TNF-γ, ↑ microbial action of macrophages; involved in phagocytic and oxidative burst activity of macrophages activated during inflammation |
| T365 | 927-1126 | Sentence | denotes | Development and differentiation of Th1 and Th2 cells; ↑ TGF- β-dependent conversion of naïve T cells into regulatory T cells; plays a role in acquisition of mucosal-homing properties by T and B cells |
| T366 | 1127-1292 | Sentence | denotes | Development and differentiation of Th 1 and Th2 cells; maintains normal antibody-mediated Th2 response by suppressing IL-12, TNF-α, and IFN-γ production of Th1 cells |
| T367 | 1293-1495 | Sentence | denotes | Normal functioning of B cells, necessary for generation of antibody responses to antigen; required for B cell-mediated IgA antibody responses to bacterial polysaccharide antigens [62, 79–82, 85, 92, 95] |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1443 | 707-710 | Gene | denotes | IFN | Gene:3439 |
| 1444 | 758-762 | Gene | denotes | IL-2 | Gene:3558 |
| 1445 | 1263-1268 | Gene | denotes | IFN-γ | Gene:3458 |
| 1454 | 540-548 | Gene | denotes | membrane | Gene:43740571 |
| 1455 | 109-116 | Species | denotes | carrots | Tax:4039 |
| 1456 | 124-132 | Species | denotes | potatoes | Tax:4113 |
| 1457 | 157-164 | Species | denotes | spinach | Tax:3562 |
| 1458 | 198-206 | Species | denotes | apricots | Tax:36596 |
| 1459 | 217-223 | Species | denotes | papaya | Tax:3649 |
| 1460 | 225-230 | Species | denotes | mango | Tax:29780 |
| 1461 | 251-257 | Species | denotes | tomato | Tax:4081 |