PMC:7574920 / 11122-11869
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T62 | 62-65 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T63 | 117-130 | Body_part | denotes | RNA molecules | http://purl.org/sig/ont/fma/fma84126 |
| T64 | 117-120 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T65 | 151-155 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T66 | 650-663 | Body_part | denotes | RNA molecules | http://purl.org/sig/ont/fma/fma84126 |
| T67 | 650-653 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T48 | 138-146 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T49 | 639-647 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T104 | 68-69 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T105 | 151-155 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T106 | 462-463 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T107 | 519-522 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | a 2 |
| T108 | 519-522 | http://purl.obolibrary.org/obo/CLO_0001563 | denotes | a 2 |
| T109 | 565-566 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T110 | 700-701 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T40 | 121-130 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T41 | 524-531 | Chemical | denotes | agarose | http://purl.obolibrary.org/obo/CHEBI_2511 |
| T42 | 654-663 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 151 | 149-150 | Gene | denotes | N | Gene:43740575 |
| 152 | 138-148 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 153 | 639-649 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 154 | 292-295 | Chemical | denotes | ice | MESH:D007053 |
| 155 | 524-531 | Chemical | denotes | agarose | MESH:D012685 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 27-29 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T60 | 174-176 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T61 | 469-471 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T62 | 578-580 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T71 | 0-66 | Sentence | denotes | Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA. |
| T72 | 67-213 | Sentence | denotes | (A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. |
| T73 | 214-317 | Sentence | denotes | At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. |
| T74 | 318-536 | Sentence | denotes | Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. |
| T75 | 537-747 | Sentence | denotes | The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min. |