PMC:7574920 / 11122-11869 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T62","span":{"begin":62,"end":65},"obj":"Body_part"},{"id":"T63","span":{"begin":117,"end":130},"obj":"Body_part"},{"id":"T64","span":{"begin":117,"end":120},"obj":"Body_part"},{"id":"T65","span":{"begin":151,"end":155},"obj":"Body_part"},{"id":"T66","span":{"begin":650,"end":663},"obj":"Body_part"},{"id":"T67","span":{"begin":650,"end":653},"obj":"Body_part"}],"attributes":[{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A63","pred":"fma_id","subj":"T63","obj":"http://purl.org/sig/ont/fma/fma84126"},{"id":"A64","pred":"fma_id","subj":"T64","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A65","pred":"fma_id","subj":"T65","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A66","pred":"fma_id","subj":"T66","obj":"http://purl.org/sig/ont/fma/fma84126"},{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T48","span":{"begin":138,"end":146},"obj":"Disease"},{"id":"T49","span":{"begin":639,"end":647},"obj":"Disease"}],"attributes":[{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T104","span":{"begin":68,"end":69},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T105","span":{"begin":151,"end":155},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T106","span":{"begin":462,"end":463},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T107","span":{"begin":519,"end":522},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"},{"id":"T108","span":{"begin":519,"end":522},"obj":"http://purl.obolibrary.org/obo/CLO_0001563"},{"id":"T109","span":{"begin":565,"end":566},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T110","span":{"begin":700,"end":701},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T40","span":{"begin":121,"end":130},"obj":"Chemical"},{"id":"T41","span":{"begin":524,"end":531},"obj":"Chemical"},{"id":"T42","span":{"begin":654,"end":663},"obj":"Chemical"}],"attributes":[{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_2511"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-PubTator","denotations":[{"id":"151","span":{"begin":149,"end":150},"obj":"Gene"},{"id":"152","span":{"begin":138,"end":148},"obj":"Species"},{"id":"153","span":{"begin":639,"end":649},"obj":"Species"},{"id":"154","span":{"begin":292,"end":295},"obj":"Chemical"},{"id":"155","span":{"begin":524,"end":531},"obj":"Chemical"}],"attributes":[{"id":"A151","pred":"tao:has_database_id","subj":"151","obj":"Gene:43740575"},{"id":"A152","pred":"tao:has_database_id","subj":"152","obj":"Tax:2697049"},{"id":"A153","pred":"tao:has_database_id","subj":"153","obj":"Tax:2697049"},{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"MESH:D007053"},{"id":"A155","pred":"tao:has_database_id","subj":"155","obj":"MESH:D012685"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T59","span":{"begin":27,"end":29},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T60","span":{"begin":174,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T61","span":{"begin":469,"end":471},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T62","span":{"begin":578,"end":580},"obj":"http://purl.obolibrary.org/obo/GO_0001171"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}

{"project":"LitCovid-sentences","denotations":[{"id":"T71","span":{"begin":0,"end":66},"obj":"Sentence"},{"id":"T72","span":{"begin":67,"end":213},"obj":"Sentence"},{"id":"T73","span":{"begin":214,"end":317},"obj":"Sentence"},{"id":"T74","span":{"begin":318,"end":536},"obj":"Sentence"},{"id":"T75","span":{"begin":537,"end":747},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Fig. 1 Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min."}